Job Description Q46802 Confidence 99.32% Date Wed Jan 25 15:21:12 GMT 2012 Rank 41 Aligned Residues 214 % Identity 23% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	P	H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L	E	S	E	L	F	G	Y
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	.	.	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I
Template Known Secondary structure		S		S	S	G	G	G			S														.	.	T	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F	I	A	E	G
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	.	.	.	.	.	.	.	.	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	.	.	.	.	.	.	.	.	.	.	.	K	S	C	R	F	I	L	S	C	N	Y	.	.	.	.	.	.	.	V	S
Template Known Secondary structure						T	S			S	T	T		S			.	.	.	.	.	.	.	.						T	G	G	G	S																T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.									.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.								.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	N	L	R	E	L	S	N	L	M	E	Y	L	V	N	V	V
Query Conservation
Alig confidence																					.	.	.	.																	.	.	.	.	.	.	.																.																	.	.
Template Conservation																					.	.	.	.																	.	.	.	.	.	.	.																.																	.	.
Template Sequence		R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	.	.	.	.	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	.	.	.	.	.	.	.	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	.	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	A	.	.
Template Known Secondary structure		G	S							T											.	.	.	.																T	.	.	.	.	.	.	.																.	T	T														T	.	.
Template Predicted Secondary structure																					.	.	.	.																	.	.	.	.	.	.	.																.																	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	G	E	V	I	D	S	T	L	L	P	P	N	L	L	N
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	G	E	V	V	D	A	D	T	I	Y	Q	I	T	A	T
Template Known Secondary structure		.	T		S
Template Predicted Secondary structure		.
Template SS confidence
			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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