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Job DescriptionQ46802
Confidence100.00%DateWed Jan 25 15:21:12 GMT 2012
Rank3Aligned Residues236
% Identity42%Templatec2c99A_
PDB info PDB header:transcription regulationChain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf
Resolution1.9 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   272.......280.........290.........300.........310.........320.........330.........340.........350.
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Query Sequence  LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG
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Template Sequence  LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAK. . . .
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TTS
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B


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   8.10.........20.........30.........40.........50.........60.........70.........80...
 
   352.......360.........370.........380.........390.........400.........410.........420.........430.
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Query Sequence  ASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF
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Template Sequence  . . . . RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLL
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B

TTTSSGGGS
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   91........100.........110.........120.........130.........140.........150.........160......
 
   432.......440.........450.........460.........470. ........480.........490.........500.........510
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Query Sequence  YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYP. GIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVI
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Template Sequence  DRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV. YRHGTSDY
Template Known Secondary structure 
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GGGSTT
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   167..170.........180.........190.........200.........210.........220.........230....... ..240.....
 
   511.....
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Query Sequence  DSTLLP
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Template Sequence  PLDDII
Template Known Secondary structure 
B



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   246...250.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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