Job Description Q46802 Confidence 90.53% Date Wed Jan 25 15:21:12 GMT 2012 Rank 404 Aligned Residues 134 % Identity 15% Template c1yspA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator kdgr; PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr. Resolution 1.80 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.									.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.											.
Query SS confidence																																																															.	.	.	.	.	.	.	.											.
Query Sequence		Q	I	Q	P	T	I	Q	R	F	A	R	M	L	A	S	V	L	Q	L	E	V	E	I	V	D	E	N	L	C	R	V	A	G	T	G	A	Y	G	K	F	L	G	R	Q	L	S	G	N	S	R	L	L	R	H	V	L	E	T	K	T	E	.	.	.	.	.	.	.	.	K	V	V	T	Q	S	R	F	D	P	.
Query Conservation																																																															.	.	.	.	.	.	.	.											.
Alig confidence																																																															.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		D	L	I	R	S	A	D	I	Q	M	R	E	L	S	R	L	T	K	E	T	I	H	L	G	A	L	D	E	D	S	I	V	Y	I	H	K	I	D	S	M	I	G	R	R	N	P	L	Y	S	T	A	I	G	K	V	L	L	A	W	R	D	R	D	E	V	K	Q	I	L	E	G	V	E	Y	K	R	S	T	E	R
Template Known Secondary structure																													T	T																		S	S	S	S									T	S										T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
																			83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	E	G	C	D	S	K	E	N	C	R	E	K	A	F	L	G	T	P	V	I	L	.	Q	D	R	C	V	G	V	I	S	L	I	A	V	T	H	E	Q	Q	E	H	I	S	D	N	L	R	E	F	S	D	Y	V	R	H	I	S	T	I	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																	.	.	.
Template Conservation																																																											.	.	.
Template Sequence		T	I	T	S	T	E	A	L	L	P	V	L	D	Q	V	R	E	Q	G	Y	G	E	D	N	E	E	Q	E	E	G	L	R	C	I	A	V	P	V	F	D	R	F	G	V	V	I	A	G	L	S	I	S	F	P	T	L	R	.	.	.	F	S	E	E	R	L	Q	E	Y	V	A	M	L	H	T	A	A	R	K	I
Template Known Secondary structure					S															T						S	S	S	S	T	T	B										T	T	S											B	S	S	S	.	.	.
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		145	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	Q	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions