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Job DescriptionQ46802
Confidence96.62%DateWed Jan 25 15:21:12 GMT 2012
Rank195Aligned Residues241
% Identity15%Templatec1xxiF_
PDB info PDB header:transferaseChain: F: PDB Molecule:dna polymerase iii, delta subunit; PDBTitle: adp bound e. coli clamp loader complex
Resolution4.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   296...300.........310.........320......... 330.........340.........350.........360........
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Query Sequence  VMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC. . . . . . . AAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGT
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Template Sequence  YLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQ. . . . . . . . . . . . . . . . . . . . . T
Template Known Secondary structure  S
T





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   21........30.........40.........50.........60.........70........ .
 
   369370.........380.........390.........400.........410...... ...420.........430.........440.
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Query Sequence  LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQN. . . . . . . LAQFIAEGKFREDLFYRLNVIPITL
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Template Sequence  LLLLLPENGPNAAINEQLLTLTG. . . . . . . . . LLHDDLLLIVRGNKLSKAQENAAWFTALAN. . . . . . . . . . . RSVQVTC
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TTT.........T

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TTTTTSTT...........T
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   80.........90.........100.. .......110.........120.........130.. .......
 
   442.......450.........460.........470.........480.........490.........500.........510.........520.
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Query Sequence  PPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLN
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Template Sequence  QTPEQ. . AQLPRWVAARAKQLN. . . . . . . LELDDAANQVLCYCY. EGNLLALAQALERLSLLWPDGK. LTLPRVEQAVND
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   140.... .....150......... 160.........170.... .....180.........190...... ...200........
 
   522.......530........ .540.........550.........560.........570...... ...580..
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Query Sequence  NGTTEQSDVTEVSEAHL. . . . . . . . . . . . . . . . SLDDAGGTALEEMEKQMIREALSRHNSKKQVADELGIG. . . IATLYR
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Template Sequence  AAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGE
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   209210.........220.........230.........240.........250.........260.........270.........280........
 
   583.....
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Query Sequence  KIKKYE
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Template Conservation   
   
Template Sequence  ALNRLS
Template Known Secondary structure  S
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   289290....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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