Job Description Q46802 Confidence 99.11% Date Wed Jan 25 15:21:12 GMT 2012 Rank 60 Aligned Residues 196 % Identity 20% Template c1xxhB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex Resolution 3.45 Å

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		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																						.	.	.	.	.	.	320	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	D	E	P	H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	L	S	G	R	R	N
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		K	W	R	P	Q	T	F	A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	.	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F
Template Known Secondary structure			T			S	S	G	G	G			S														T	.	T				S							S	T	T	S	S													S		T	T		S		S	S			S		S									T
Template Predicted Secondary structure																												.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L	E	S	E	L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T						S	S		S	T	T	T	T								T				S		S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	.						T	G	G	G															S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.													.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L
Query Conservation
Alig confidence		.														.	.	.	.	.	.	.																						.	.	.	.																	.	.	.	.	.	.	.
Template Conservation		.														.	.	.	.	.	.	.																						.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		.	P	P	E	H	V	K	F	L	L	A	T	T	D	.	.	.	.	.	.	.	P	Q	K	L	P	V	T	I	L	S	R	C	L	Q	F	H	L	K	A	L	D	.	.	.	.	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	.	.	.	.	.	.	.	I	A	H	E	P	R	A	L	Q	L	L
Template Known Secondary structure		.			T	T								S		.	.	.	.	.	.	.	T	T	S	S							T	S										.	.	.	.														T	T	T	.	.	.	.	.	.	.			B
Template Predicted Secondary structure		.														.	.	.	.	.	.	.																						.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
			146	.	.	.	150	.	.	.	.	.	.	.	.								.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.								.	.	.	.	200	.	.	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	H	R	W	P	G	N	L	R	E	L	S	N	L	M	E	Y	L	V
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		A	R	A	A	.	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I
Template Known Secondary structure					S	.		S
Template Predicted Secondary structure						.
Template SS confidence
		207	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions