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Job DescriptionQ46802
Confidence95.65%DateWed Jan 25 15:21:12 GMT 2012
Rank215Aligned Residues137
% Identity14%Templatec1w36G_
PDB info PDB header:recombinationChain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; PDBTitle: recbcd:dna complex
Resolution3.1 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   283......290.........300.........310......... 320.........330........ .340.......
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Query Sequence  KRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGR. . RNKPFIAINCAAIPEQLLE. . . . . . . . . . . . . SELFGYVKG
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Template Sequence  QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI
Template Known Secondary structure  TBS

TTSTT
SSS


BSSTSTT

S



S
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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   348.350.........360.........370.........380.........390.........400.........410.........420.......
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Query Sequence  AFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFR
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Template Sequence  PEDASTLHRLLHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA. . . . . . . . . . . . . . RVIFLGDRDQLASVEAGAVL
Template Known Secondary structure  S


BTTTS


TTS

S
S
SGGG
BS
TT
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   234.....240.........250.........260.........270......... 280.........290.........
 
   428.430...
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Query Sequence  EDLFYR
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Template Sequence  GDICAY
Template Known Secondary structure  GGG
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Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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