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Job DescriptionQ46802
Confidence98.71%DateWed Jan 25 15:21:12 GMT 2012
Rank99Aligned Residues202
% Identity19%Templatec1sxjE_
PDB info PDB header:replicationChain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   262.......270.........280.........290.........300.........310.........320.........330.........340.
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Query Sequence  NAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL
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Template Sequence  DKYRPKSLNALSHNEELTNFLKSLSDQP. RDLPHLLLYGPNGTGKKTRCMALLES. . . IFGPGVYRNVVSSPYHLEI. . .
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SGGG

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   6...10.........20.........30... ......40.........50......... 60.........70........
 
   342.......350.........360.........370.........380.........390.........400.........410.........420.
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Query Sequence  FGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI
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Template Sequence  . . TPSNDRIVIQELLKEVAQMEQRYKCVIINEANSLTKDAQAALRRTMEKYS. . . . . . . . . . . KNIRLIMVCDS. . . . . .
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   97..100.........110.........120.........130.........140...... ...150.......
 
   422.......430.........440.........450.........460.........470.........480.........490.........500.
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Query Sequence  AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLV
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Template Sequence  . MSPIIAPIKSQCLLIRCPAPSDSE. . . . . . . . ISTILSDVVTNERIQL. . ETKDILKRIAQA. SNGNLRVSLLMLESMA
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   174.....180.........190....... ..200.........210... ......220..... ....230.........240.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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