Job Description Q46802 Confidence 98.78% Date Wed Jan 25 15:21:12 GMT 2012 Rank 94 Aligned Residues 206 % Identity 15% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.																290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	P	H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		A	P	T	N	L	Q	Q	V	C	G	N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	.	.	.	L	G	Y	D	I	L	E	Q	N	A
Template Known Secondary structure				S	S	G	G	G			S														T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												.	.	.	T	T								T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380				.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		A	A	I	P	E	Q	L	L	E	S	E	L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	.	.	.	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D
Query Conservation																																																					.	.	.
Alig confidence																																	.	.																			.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	V	R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	.	.	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	.	.	.	.	.	.	.	.	.	.	.	T	P
Template Known Secondary structure		T	S										T	G	G	G	G	T	T				S	T	T	T	T	T				S	.	.	S	T	T	S							S	G	G	G			T	T	S	T	T													S	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.												.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	I	I	S	A	T	N	Q	N	L	A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																				.	.	.	.																	.	.	.	.	.	.	.																.
Template Conservation												.	.	.	.	.	.	.	.																				.	.	.	.																	.	.	.	.	.	.	.																.
Template Sequence		L	I	L	I	C	N	E	R	N	L	.	.	.	.	.	.	.	.	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	.	.	.	.	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	.	.	.	.	.	.	.	F	K	L	D	P	N	V	I	D	R	L	I	Q	T	T	.
Template Known Secondary structure							S		T	T	S	.	.	.	.	.	.	.	.	S	T	T	G	G	G	T	T	T	S										.	.	.	.																T	.	.	.	.	.	.	.					T	T									T	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																				.	.	.	.																	.	.	.	.	.	.	.																.
Template SS confidence
		451	.	.	.	.	.	.	.	.	460									.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.					480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.								.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	L	R	E	L	S	N	L	M	E	Y	L	V	N	V	V	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	D	I	R	Q	V	I	N	L	L	S	T	I	S	T	T	T	K	T
Template Known Secondary structure		T	T										T						S	S
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions