Job Description Q46802 Confidence 98.58% Date Wed Jan 25 15:21:12 GMT 2012 Rank 106 Aligned Residues 196 % Identity 20% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.												.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	.	.	.	.	.	.	.	.	.	.	.	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																													.	.	.														.	.	.	.
Template Conservation																																																														.	.	.														.	.	.	.
Template Sequence		G	Y	D	D	V	G	G	C	R	K	Q	L	A	Q	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	.	.	.	T	G	A	F	F	F	L	I	N	G	P	E	I	.	.	.	.
Template Known Secondary structure			G	G	G			S																			T	T																		S	T	T	S	S												.	.	.		T												.	.	.	.
Template Predicted Secondary structure																																																														.	.	.														.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.												.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																														.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	S	E	L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	.	.	.	N	T	G	T	L	F	L	D	E	I	G	D	M	.	.	.	.	.	.	.	.	.	.	.	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P
Query Conservation																														.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.	.														.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	M	S	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	.	.	.	.	.	.	.	.	.	L	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		T	S		T	T																T		S							T	G	G	G	T				S	S	S				T	T															.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.	.	.	.
Template SS confidence
											275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.										.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R
Query Conservation
Alig confidence															.	.																.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	A	H	V	I	V	M	A	A	T	N	R	.	.	P	N	S	I	D	P	A	L	R	R	F	G	R	F	D	.	.	R	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L	Q	I	H	T	.	.	.	.	.	.	.	.	.	.	.	.	K	N	M	K	L	A	D	D	V	D	L	E	Q	V	A
Template Known Secondary structure		G	G	G									S		.	.	G	G	G	S		G	G	G	T	S	T	T	S	S		.	.																				T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S				T	T
Template Predicted Secondary structure															.	.																.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.													.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	R	W	P	G	N	L	R	E	L	S	N	L	M	E	Y	L	V	N	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	T	H	G	H	V	G	A	D	L	A	A	L	C	S	E	A	A	L	Q	A
Template Known Secondary structure		T	T			S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions