Job Description Q46802 Confidence 99.65% Date Wed Jan 25 15:21:12 GMT 2012 Rank 21 Aligned Residues 193 % Identity 19% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	A	.	.	.	.	.	.	.	.	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L	E	S	E	L
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																																										.	.	.
Template Sequence		N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K
Template Known Secondary structure		T						S																					S	S		S									S	T	T	S	S													.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.											.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	.	.	.	.	.	.	.	.	.	.	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I	S
Query Conservation																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Sequence		C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	.	.	.	.	.	.	.	.	.	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	.	.	.	.	.	.	.	.	K	A	P	P	Q	G	R	K	L	L	I	I	G
Template Known Secondary structure														T	S	.	.	.	.	.	.	.	.	.	S													T	T		B	T	T	T	T	B													T	T	.	.	.	.	.	.	.	.				S	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template SS confidence
		582	.	.	.	.	.	.	.	590	.	.	.	.	.										.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.									.	.	.	.	.	.	.	.	640	.	.	.	.
		412	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		A	T	N	Q	.	.	N	L	A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	N
Query Conservation						.	.
Alig confidence						.	.														.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Sequence		T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	T	.	.	.	.	.	.	.	.	.	T	I	H	V	P	N	I	A	T	G	E	Q	.	.	.	.	.	.	.	.	.	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G
Template Known Secondary structure				S								T	T	G	G	G	T	S	S		.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.									T		S													T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.										.	.	.	.	.	.	670	.	.	.	.	.										.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	L	S	N	L	M	E	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		707	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions