Job Description Q46802 Confidence 99.81% Date Wed Jan 25 15:21:12 GMT 2012 Rank 13 Aligned Residues 257 % Identity 18% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		D	E	P	H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	.	.	.	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L	E	S	E	L
Query Conservation																											.	.	.
Alig confidence																											.	.	.																												.	.	.
Template Conservation																																																									.	.	.
Template Sequence		R	P	K	S	L	D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	G	E	V	L	D	H	V	L	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	.	.	.	L	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G	D	M	A	A	I
Template Known Secondary structure		S		S	S	G	G	G			S																			T										S	S	T	T	S	S												.	.	.		T								T	T	T			S
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	N	K	A	V	E	E	L	L	Y	S	A	I	E	D	.	.	.	.	.	.	.	F	Q	I	D	I	Q	P	F	T	L	V	G	A	T	V	R	S	G	L	L	S	S	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T			T	T							T	G	G	G																.	.	.	.	.	.	.	S														S		G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template SS confidence
																				97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	N	L	R	E	L	S	N	L	M	E	Y	L	V
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.										.	.																.	.	.	.	.	.	.															.
Template Conservation									.	.	.	.	.	.	.	.	.										.	.																.	.	.	.	.	.	.															.
Template Sequence		L	R	S	R	F	G	I	.	.	.	.	.	.	.	.	.	I	L	E	L	D	F	Y	T	V	.	.	K	E	L	K	E	I	I	K	R	A	A	S	L	M	D	.	.	.	.	.	.	.	V	E	I	E	D	A	A	A	E	M	I	A	K	R	.	S	R	G	T	P	R	I	A	I	R	L	T	K	R	V	R
Template Known Secondary structure				T	T		S		.	.	.	.	.	.	.	.	.										.	.														T	T	.	.	.	.	.	.	.			B											T	.	S	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.										.	.																.	.	.	.	.	.	.															.
Template SS confidence
		167	.	.	170	.	.	.										.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		502	.	.	.			.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.					.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure						.	.																																																													.	.	.	.
Query SS confidence						.	.																																																													.	.	.	.
Query Sequence		N	V	V	P	.	.	S	G	E	V	I	D	S	T	L	L	P	P	N	L	L	N	N	G	T	T	E	Q	S	D	V	T	E	V	S	E	A	H	L	S	L	D	D	A	G	G	T	A	L	E	E	M	E	K	Q	M	I	R	E	A	L	S	R	H	N	S	.	.	.	.	K	K	Q	V	A	D	E	L	G	I
Query Conservation						.	.																																																													.	.	.	.
Alig confidence						.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	M	L	T	V	V	K	A	D	R	I	N	T	D	I	V	L	K	T	M	E	V	L	N	I	D	D	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	F	D	R	K	I	L	K	T	I	I	E	I	Y	R	G	G	P	V	G	L	N	A	L	A	A	S	L	G	V
Template Known Secondary structure								T		S	S	B													T			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	T	T			B										T	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.																				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		576	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	A	T	L	Y	R	K	I	K	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	D	T	L	S	E	V	Y	E	P	Y
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions