Job Description P0A9F3 Confidence 87.07% Date Thu Jan 5 11:10:03 GMT 2012 Rank 205 Aligned Residues 182 % Identity 11% Template c3r39A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica Resolution 2.14 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	S	L	H	M	H	Q	G	S	P	T	Q	I	A	D	A	V	S	K	G	N	A	D	F	A	I	A	T	E	A	L	H	L	Y	E	D	L	V	M	L	P	C	Y	H	W	N	R	A	I	V	V	T	P	D	H	P	L	A	G	K	K	A	I	T	I	E	E	L	A	Q	Y	P	L	V	T	Y	T	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F	S	G	I	S	I	T	D	K	R	K	K	V	I	D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K	Y	S	I	G	Y	P	R	G	M
Template Known Secondary structure		T																				T	S		S														T	T							S											T	T	S					S	S	G	G	G	G	G	G	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		F	T	G	R	S	E	L	D	T	A	F	N	R	A	G	L	T	P	R	I	V	F	T	A	T	D	A	D	V	I	K	T	Y	V	R	L	G	L	G	V	G	V	I	A	S	M	A	V	.	.	D	P	V	A	D	P	D	L	V	R	V	D	A	H	D	I	F	S	H	S	T	T	K	I	G	F	R	R	S	T
Query Conservation																																																		.	.
Alig confidence																																																		.	.
Template Conservation
Template Sequence		A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G	N	L	D	L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	P	I	E	S	R	Y	V	F	K	N	V	D	Q	L	G	I	A	F	K	K	G	S
Template Known Secondary structure		T									T	G	G	G	T	S			G	G	G					S	S										T	T	S		S															T	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	R	S	Y	M	Y	D	F	I	Q	R	F	A	P	H	L	T	R	D	V	V	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	R	D	D	F	N	L	W	L	K	E	Q	G	P	Q	K	I	S	G	I	V	D	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions