Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9F3
Confidence36.92%DateThu Jan 5 11:10:03 GMT 2012
Rank389Aligned Residues208
% Identity11%Templatec3kn3C_
PDB info PDB header:transcriptionChain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.........120.........130.........140.........150......... 160.......
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Query Sequence  SLYIATTHTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLV. . . . . . MLPCYHWN
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Template Sequence  ELRXATTTSTDNTGLLDVLAPAYKKDTGVDLKWVAVGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVXYND
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   168.170.........180.... .....190.........200.........210 .........220.........230.......
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Query Sequence  RAIVVTPDHPLAGKKAI. . . TIEELAQYPLVTYTFGFTGRSELDTA. . . . . . . FNRAGLTPRIVFTATDADVIKTYVRLG
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Template Sequence  FVIIGNPSFKQKFTGXSVAEAFKLIEKEQVKFVSRGDKSGTHSKEREVWKEALGKIPEKESWYIEAGQGXLATINIAEEQ
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GGGTTTTTT

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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   238.240... ......250.........260.........270......... 280.........290.........300.
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Query Sequence  LGVGVI. . . . . ASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTF. . . . LRSYMYDFIQRFAPHLTRDVVD
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Template Sequence  KGLTLTDRGTFIKYESNHKGKPPXVIVLEGDNTLKNFYSIXAVNPKRCEKADYKGAKQFIDWIVSEKXQAEIA
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   163......170.........180.........190.........200.........210.........220.........230.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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