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Job DescriptionP0A9F3
Confidence100.00%DateThu Jan 5 11:10:03 GMT 2012
Rank3Aligned Residues292
% Identity19%Templatec1iz1B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:lysr-type regulatory protein; PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAI
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Template Sequence  MEFRQLKYFIAVAEAG. NMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIE. LTAAGHAFLEDARRILELAGRS
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Query Sequence  KSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM
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Template Sequence  GDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIV
Template Known Secondary structure  TSS
SGGGGTSTT

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Query Sequence  LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPL. VTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLG
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Template Sequence  NIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAA
Template Known Secondary structure  GGGGGGTTT
GGGGTTS

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Query Sequence  VGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLT
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Template Sequence  SSIVPASVAAI. RWPDIAFARIVGTRVKVPISCIFRKEK. QPPILARFVEHVRRSAK
Template Known Secondary structure  S.

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   239240......... 250.........260.........270...... ...280.........290...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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