Phyre 2 alignment of P0A8J8 with d2bmfa2

Job Description P0A8J8
Confidence 99.97% Date Thu Jan 5 11:08:00 GMT 2012

Rank 46 Aligned Residues 267

% Identity 19% Template d2bmfa2

SCOP info P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RNA helicase

Resolution 2.41

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	A	G	R	D	V	A	G	Q	A	Q	T	G	T	G	K	T	M	A	F	L	T	S	T	F	H	Y	L	L	S	H	P	A	I	A	D	R	K	V	N	Q	P	R	A	L	I	M	A	P	T	R	E	L	A	V	Q	I	H	A	D	A	E	P	L	A	E	A	T	G	L	K	L	G	L	A	Y	G	G	D
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Sequence	F	R	K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	Y	L	P	A	I	V	R	E	A	I	K	R	G	L	.	.	.	.	.	.	.	.	.	R	T	L	I	L	A	P	T	R	V	V	A	A	E	M	E	E	A	L	R	G	L	P	I	R	Y	Q	T	G	.	.	.	.	.	.	.	.
Template Known Secondary structure	S	S	T	T									T	T	S	S	T	T	T	T													T		.	.	.	.	.	.	.	.	.							S	S											T	T	T	S			B					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template SS confidence
	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

	123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	Y	D	K	Q	L	K	V	L	E	S	G	V	D	I	L	I	G	T	T	G	R	L	I	D	Y	A	K	Q	N	H	I	N	L	G	A	I	Q	V	V	V	L	D	E	A	D	R	M	Y	D	L	G	F	I	K	D	I	R	W	L	F	R	R	M	P	P	A	N	Q	R	L	N	M	L	F	S	A	T	L	S
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	R	E	I	V	D	L	M	C	H	A	T	F	T	M	R	L	L	S	P	I	R	V	P	N	Y	N	L	I	I	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	S	T	R	V	E	M	G	.	.	E	A	A	G	I	F	M	T	A	T	P	P
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.			S														T	S	S	S						S						S	T	T			S																	T	.	.	S								S	S		T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.
Template SS confidence
													254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.

	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	R	V	R	E	L	A	F	E	Q	M	N	N	A	E	Y	I	E	V	E	P	E	Q	K	T	G	H	R	I	K	E	E	L	F	Y	P	S	N	E	E	K	M	R	L	L	Q	T	L	I	E	E	E	W	P	D	R	A	I	I	F	A	N	T	K	H	R	C	E	E	I	W	G	H	L	A	A	D	G	H	R
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	S	R	D	P	F	P	Q	S	N	A	P	I	M	D	E	E	R	E	I	P	E	R	S	W	N	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	W	V	T	D	F	K	G	K	T	V	W	F	V	P	S	I	K	A	G	N	D	I	A	A	C	L	R	K	N	G	K	K
Template Known Secondary structure	T				S	S				S	S												S			S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S		S							S																T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.																			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

	283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.																				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	G	L	L	T	G	D	V	A	Q	K	K	R	L	R	I	L	D	E	F	T	R	G	D	L	D	I	L	V	A	T	D	V	A	A	R	G	L	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	V	T	H	V	F	N	Y	D	L	P	D	D	C	E	D	Y	V	H	R
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence	V	I	Q	L	S	R	K	T	F	D	S	E	Y	.	.	.	.	I	K	T	R	T	N	D	W	D	F	V	V	T	T	D	I	S	E	M	G	A	N	F	K	A	E	R	V	I	D	P	R	R	C	M	K	P	V	I	L	T	D	G	E	E	R	V	I	L	A	G	P	M	P	V	T	H	S	S	A	A	Q	R
Template Known Secondary structure						T	T						G	.	.	.	.	G	G	G	G	T	S			S						G	G	G	G	T	T						S																S	S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
	382	.	.	.	.	.	.	.	390	.	.	.	.					.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

	344	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	I	G	R	T	G	R	A	G	.	A	S	G	H	S	I	S	L	A	C	E
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence	R	G	R	V	G	R	N	P	K	N	E	N	D	Q	Y	I	Y	M	G	E
Template Known Secondary structure		T	T	S	S		S	S	S										S
Template Predicted Secondary structure
Template SS confidence
	458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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