Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8J8
Confidence100.00%DateThu Jan 5 11:08:00 GMT 2012
Rank22Aligned Residues330
% Identity23%Templatec4a4zA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90.........100.........110
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Query Sequence  NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEA
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Template Sequence  ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH. . . . . . . . . . RNMTKTIYTSPIKALSNQKFRDFKETFVN
Template Known Secondary structure 


TT


TTS
S..........TT
S
GGGTT


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   329330.........340.........350.........360......... 370.........380.........390........
 
   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN
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Template Sequence  . . . . IGLITGDVQINPD. . . . . . . ANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP. . Q
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SS

TT.......SST
SGGGG

TT


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..T
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   401........410... ......420.........430.........440.........450.........460...... .
 
   191........200.........210.........220.........230.........240 ..
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Query Sequence  QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN. . . . . . . . . . . . . . . . . . . . . . . . . . . . EE
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Template Sequence  HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNDGPSKK
Template Known Secondary structure  T



TTT


SS
SS
TT
TT

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TT
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   468.470.........480.........490.........500.........510.........520.........530.........540.......
 
   243......250.........260.........270.........280.. .
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Query Sequence  KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . V
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Template Sequence  TWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI
Template Known Secondary structure  TT

S
S
TTTT




TTS
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TTT
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   613......620.........630.........640.........650.........660.........670.........680.........690..
 
   284.....290.........300.........310.........320.........330 .........340.........350. ..
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Query Sequence  GLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFN. . . . . . . . YDLPDDCEDYVHRIGRTGRAG. . AS
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Template Sequence  AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDST
Template Known Secondary structure 
TTS
TT

S
TS




SS
STT

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   693......700.........710.........720.........730.........740.........750.........760.........770..
 
   354.....360.........370.........380...
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Query Sequence  GHSISLACEEYALNLPAIETYIGHSIPVSK
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Template Sequence  GTVIVMAYNSPLSIATFKEVTMGVPTRLQS
Template Known Secondary structure 

SS


S






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   773......780.........790.........800..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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