Phyre 2 alignment of P0A8J8 with c3rc8A

Job Description P0A8J8
Confidence 100.00% Date Thu Jan 5 11:08:00 GMT 2012

Rank 30 Aligned Residues 294

% Identity 19% Template c3rc8A_

PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment

Resolution 2.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	I	Q	A	L	A	L	P	L	T	L	A	G	R	D	V	A	G	Q	A	Q	T	G	T	G	K	T	M	A	F	L	T	S	T	F	H	Y	L	L	S	H	P	A	I	A	D	R	K	V	N	Q	P	R	A	L	I	M	A	P	T	R	E	L	A	V	Q	I	H	A	D	A	E	P	L	A	E	A	T	G
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence	I	P	P	N	W	Y	P	D	A	R	A	M	Q	R	K	I	I	F	H	S	G	P	T	N	S	G	K	T	Y	H	A	I	Q	K	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	K	S	G	V	Y	C	G	P	L	K	L	L	A	H	E	I	F	E	K	S	N	A	A	.	.	.	.	G
Template Known Secondary structure		G	G	G	G						T	S										S	S	S	S	S	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S						S	S														T	.	.	.	.	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
	187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.															.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.

	113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	K	L	G	L	A	Y	G	G	D	G	Y	D	K	Q	L	K	V	L	E	S	G	V	D	I	L	I	G	T	T	G	R	L	I	D	Y	A	K	Q	N	H	I	N	L	G	A	I	Q	V	V	V	L	D	E	A	D	R	M	Y	D	L	G	F	I	K	D	I	R	W	L	F	R	R	M	P	P	A	N	Q	R
Query Conservation
Alig confidence																		.	.															.	.	.	.	.	.	.	.																																				.	.
Template Conservation																		.	.															.	.	.	.	.	.	.	.																																				.	.
Template Sequence	V	P	C	D	L	V	T	G	E	E	R	V	T	V	Q	P	N	.	.	G	K	Q	A	S	H	V	S	C	T	V	E	M	C	.	.	.	.	.	.	.	.	S	V	T	T	P	Y	E	V	A	V	I	D	E	I	Q	M	I	R	D	P	A	R	G	W	A	W	T	R	A	L	L	G	L	C	A	.	.	E	E
Template Known Secondary structure								S	S						S	S	S	.	.	S				S						G	G	G		.	.	.	.	.	.	.	.		S	S	S										G	G	G	G	G		T	T	T														.	.
Template Predicted Secondary structure																		.	.															.	.	.	.	.	.	.	.																																				.	.
Template SS confidence
	249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.									280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.

	193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	N	M	L	F	S	A	T	L	S	Y	R	V	R	E	L	A	F	E	Q	M	N	N	A	E	Y	I	E	V	E	P	E	Q	K	T	G	H	R	I	K	E	E	L	F	Y	P	S	N	E	E	K	M	R	L	L	Q	T	L	I	E	E	E	W	P	D	R	A	I	I	F	A	N	T	K	H	R	C	E	E	I
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	H	L	C	G	E	P	A	A	I	D	L	V	M	E	L	M	Y	T	T	G	E	E	V	E	V	R	D	Y	K	R	L	T	P	I	S	V	L	D	H	A	L	E	S	L	D	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	G	D	C	I	V	C	F	S	K	N	D	I	Y	S	V
Template Known Secondary structure							G	G	G												T											S	S						S	S				S	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.																.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

	273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.																																.	.	.
Query SS confidence																															.	.																																.	.	.
Query Sequence	W	G	H	L	A	A	D	G	H	R	V	G	L	L	T	G	D	V	A	Q	K	K	R	L	R	I	L	D	E	F	.	.	T	R	G	D	L	D	I	L	V	A	T	D	V	A	A	R	G	L	H	I	P	A	V	T	H	V	F	N	Y	D	L	.	.	.	P	D	D	C	E	D	Y	V	H	R	I	G	R	T
Query Conservation																															.	.																																.	.	.
Alig confidence																															.	.																						.										.	.	.
Template Conservation																																																						.
Template Sequence	S	R	Q	I	E	I	R	G	L	E	S	A	V	I	Y	G	S	L	P	P	G	T	K	L	A	Q	A	K	K	F	N	D	P	N	D	P	C	K	I	L	V	A	T	D	A	I	G	M	G	L	N	L	S	.	I	R	R	I	I	F	Y	S	L	I	K	E	P	I	T	T	S	Q	A	L	Q	I	A	G	R	A
Template Known Secondary structure							T	T								T	T	S															T	T		S								G	G	G	G	S	S					.	B	S					S		S	B			B											T	T	B
Template Predicted Secondary structure																																																						.
Template SS confidence
	382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

	348	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence	G	R	A	G	.	.	.	A	S	G	H	S	I	S	L	A	C	E	E	Y	A	L	N	L	P	A	I	E	T
Query Conservation					.	.	.
Alig confidence					.	.	.										.
Template Conservation																	.
Template Sequence	G	R	F	S	S	R	F	K	E	G	E	V	T	T	M	N	.	H	E	D	L	S	L	L	K	E	I	L	K
Template Known Secondary structure				T	T	T			S						S	S	.												T
Template Predicted Secondary structure																	.
Template SS confidence
	472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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