Job Description P0A8J8 Confidence 95.89% Date Thu Jan 5 11:08:00 GMT 2012 Rank 161 Aligned Residues 129 % Identity 7% Template c3hgtA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex Resolution 2.20 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	N	E	E	K	M	R	L	L	Q	T	L	I	E	E	E	W	P	D	R	A	I	I	F	A	N	T	K	H	R	C	E	E	I	W	G	H	L	A	A	D	G	H	R	V	G	L	L	T	G	D	V	A	Q	K	K	R	L	R	I	L	D	E	F	T	R	G	D	L	D	I	L	V	A	T	D	V	A	A
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.
Template Sequence		N	S	G	K	F	S	V	L	R	D	L	I	N	L	V	Q	E	Y	E	T	E	T	A	I	V	C	R	P	G	R	T	M	D	L	L	E	A	L	L	L	G	N	K	V	H	I	K	R	Y	D	G	H	S	I	D	F	S	C	T	V	H	L	F	S	S	E	.	.	.	.	.	.	.	G	I	N	F	T	K	Y
Template Known Secondary structure		T															T	T	S										S	T											T	T	S	S						S	S	S						S								S	S	.	.	.	.	.	.	.				T	T	T	S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		R	G	L	H	I	P	A	V	T	H	V	F	N	Y	D	L	P	D	D	C	.	E	D	Y	V	H	R	I	G	R	T	G	R	A	G	A	S	G	H	S	I	S	L	A	C	E	E	Y	A	L	N	L	P	A	I	E	T	Y	I	G	H	S
Query Conservation																						.
Alig confidence																						.										.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		P	I	K	S	K	A	R	F	D	M	L	I	C	L	D	T	T	V	D	T	S	Q	K	D	I	Q	Y	L	L	Q	.	.	.	.	.	Y	K	A	P	I	V	R	L	V	A	I	N	S	I	D	H	C	R	L	F	F	G	K	K	F	D	K
Template Known Secondary structure							S			S						S	T	T			T	T	S									.	.	.	.	.											T	T	S												T		T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions