Job Description P0A8J8 Confidence 90.14% Date Thu Jan 5 11:08:00 GMT 2012 Rank 249 Aligned Residues 139 % Identity 12% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	G	Q	A	Q	T	G	T	G	K	T	M	A	F	L	T	S	T	F	H	Y	L	L	S	H	P	A	I	A	D	R	K	V	N	Q	P	R	A	L	I	M	A	P	T	R	E	L	A	V	Q	I	H	A	D	A	E	P	L	A	E	A	T	G	L	K	L	G	L	A	Y	G	G	D	G	Y	D	K	Q	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.												.	.
Template Conservation																															.	.	.	.	.	.	.	.	.												.	.
Template Sequence		L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	.	.	.	.	.	.	.	.	.	G	V	V	C	S	D	T	W	R	P	G	.	.	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A
Template Known Secondary structure								T	T	S	S														T	T	T				.	.	.	.	.	.	.	.	.								S	S	T		.	.										G	G	G	T							T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		129							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		K	.	.	.	.	.	.	V	L	E	S	G	V	D	I	L	I	G	T	T	G	R	L	I	D	Y	A	K	Q	N	H	I	N	L	G	A	I	Q	V	V	V	L	D	E	A	D	R	M	Y	D	L	G	F	I	K	D	I	R	W	L	F	R	R	M	P	P	A	N	Q	R	L	N	M	L	F	S
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T
Template Known Secondary structure											T	T		S										S	S																			S								G	G	G	G	G	G											S		T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions