Job Description P0A8J8 Confidence 99.96% Date Thu Jan 5 11:08:00 GMT 2012 Rank 61 Aligned Residues 206 % Identity 36% Template c3berA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx47; PDBTitle: human dead-box rna-helicase ddx47, conserved domain i in complex with2 amp Resolution 1.40 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	F	S	D	F	A	L	H	P	K	V	V	E	A	L	E	K	K	G	F	H	N	C	T	P	I	Q	A	L	A	L	P	L	T	L	A	G	R	D	V	A	G	Q	A	Q	T	G	T	G	K	T	M	A	F	L	T	S	T	F	H	Y	L	L	S	H	P	A	I	A	D	R	K	V	N	Q	P	R	A	L
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.
Template Sequence		K	T	F	K	D	L	G	V	T	D	V	L	C	E	A	C	D	Q	L	G	W	T	K	P	T	K	I	Q	I	E	A	I	P	L	A	L	Q	G	R	D	I	I	G	L	A	E	T	G	S	G	K	T	G	A	F	A	L	P	I	L	N	A	L	L	E	T	P	Q	R	L	.	.	.	.	.	.	.	F	A	L
Template Known Secondary structure				T	G	G	G	T												T	T			S														T	T									T	T	S																	S			S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.								.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		I	M	A	P	T	R	E	L	A	V	Q	I	H	A	D	A	E	P	L	A	E	A	T	G	L	K	L	G	L	A	Y	G	G	D	G	Y	D	K	Q	L	K	V	L	E	S	G	V	D	I	L	I	G	T	T	G	R	L	I	D	Y	A	K	Q	.	N	H	I	N	L	G	A	I	Q	V	V	V	L	D	E	A
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		V	L	T	P	T	R	E	L	A	F	Q	I	S	E	Q	F	E	A	L	G	S	S	I	G	V	Q	S	A	V	I	V	G	G	I	D	S	M	S	Q	S	L	A	L	A	K	K	P	H	I	I	I	A	T	P	G	R	L	I	D	H	L	E	N	T	K	G	F	N	L	R	A	L	K	Y	L	V	M	D	E	A
Template Known Secondary structure					S	S																G	G	G	T								T	T	S											T			S																S	T	T				T	T								S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	M	Y	D	L	G	F	I	K	D	I	R	W	L	F	R	R	M	P	P	A	N	Q	R	L	N	M	L	F	S	A	T	L	S	Y	R	V	R	E	L	A	F	E	Q	M	N	N	A	E	Y	I	E	V	E	P
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		D	R	I	L	N	M	D	F	E	T	E	V	D	K	I	L	K	V	I	P	.	.	R	D	R	K	T	F	L	F	S	A	T	M	T	K	K	V	Q	K	L	Q	R	A	A	L	K	N	P	V	K	C	A	V	S	S
Template Known Secondary structure							T	T											S	S		.	.	S	S	S							S	S														S	S
Template Predicted Secondary structure																						.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions