 |
Job Description | P0A8J8 | Confidence | 98.16% | Date | Thu Jan 5 11:08:00 GMT 2012 |
Rank | 136 | Aligned Residues | 72 |
% Identity | 25% | Template | c2xzlA_ |
PDB info |
PDB header:hydrolase/rna | Chain: A: PDB Molecule:atp-dependent helicase nam7; |
PDBTitle: upf1-rna complex
|
Resolution | 2.40 Å |
|
 |
  |   |
28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | F | H | N | C | T | P | I | Q | A | L | A | L | P | L | T | L | A | G | R | D | V | A | G | Q | A | Q | T | G | T | G | K | T | M | A | F | L | T | S | T | F | H | Y | L | L | S | H | P | A | I | A | D | R | K | V | N | Q | P | R | A | L | I | M | A | P | T | R | E | L | A | V | Q | I | H | A | D | A | E | P | L |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
| . |
|   |   |
|
|   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . |
|
|
|
|   |
|
|
|
|   |
|
|
|   |
|   |   |
|
|   |   |   |
Template Sequence |   |
N | F | A | Q | L | N | S | S | Q | S | N | A | V | S | H | V | L | Q | R | P | L | S | L | I | Q | G | P | P | G | T | G | K | T | V | T | . |
S | A | T | I | V | Y | H | L | S | K | I | H | K | D | . |
. |
. |
. |
. |
. |
. |
. |
R | I | L | V | C | A | P | S | N | V | A | V | D | H | L | A | A | K | L | R | D | L |
Template Known Secondary structure |   |
T | S |
|
|
|
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
| S | T | T | S | S |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
405 | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | |
440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . |
  |
  |   |
108 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
A |
Query Conservation |   |
  |
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
G |
Template Known Secondary structure |   |
T |
Template Predicted Secondary structure |   |
|
Template SS confidence |   |
|
  |   |
476 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|