Job Description P0A8J8 Confidence 100.00% Date Thu Jan 5 11:08:00 GMT 2012 Rank 44 Aligned Residues 268 % Identity 16% Template c2wv9A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus Resolution 2.75 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	D	V	A	G	Q	A	Q	T	G	T	G	K	T	M	A	F	L	T	S	T	F	H	Y	L	L	S	H	P	A	I	A	D	R	K	V	N	Q	P	R	A	L	I	M	A	P	T	R	E	L	A	V	Q	I	H	A	D	A	E	P	L	A	E	A	T	G	L	K	L	G	L	A	Y	G	G	D	G	Y
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Sequence		K	R	Q	L	T	V	L	D	L	H	P	G	A	G	K	T	R	R	I	L	P	Q	I	I	K	D	A	I	Q	.	.	.	.	.	.	.	.	.	K	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	G	L	P	V	R	Y	L	T	P	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									T	T	T	T	T	T	T	T												.	.	.	.	.	.	.	.	.	T	T								S	S											T	T	T	S									.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.										.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	Q	L	K	V	L	E	S	G	V	D	I	L	I	G	T	T	G	R	L	I	D	Y	A	K	Q	N	H	I	N	L	G	A	I	Q	V	V	V	L	D	E	A	D	R	M	Y	D	L	G	F	I	K	D	I	R	W	L	F	R	R	M	P	P	A	N	Q	R	L	N	M	L	F	S	A	T	L	S	Y	R
Query Conservation
Alig confidence		.	.	.	.	.																						.																				.	.
Template Conservation		.	.	.	.	.																						.																				.	.
Template Sequence		.	.	.	.	.	E	H	S	G	N	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	.	S	P	L	R	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	.	.	D	P	A	S	I	A	A	R	G	Y	I	A	T	R	V	E	A	G	E	A	A	A	I	F	M	T	A	T	P	P	G	T
Template Known Secondary structure		.	.	.	.	.				S																		.	S	S	S						S						S	T	T			.	.																	T	T	S								S	S		T	T
Template Predicted Secondary structure		.	.	.	.	.																						.																				.	.
Template SS confidence
							251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	L	A	F	E	Q	M	N	N	A	E	Y	I	E	V	E	P	E	Q	K	T	G	H	R	I	K	E	E	L	F	Y	P	S	N	E	E	K	M	R	L	L	Q	T	L	I	E	E	E	W	P	D	R	A	I	I	F	A	N	T	K	H	R	C	E	E	I	W	G	H	L	A	A	D	G	H	R	V	G
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	P	F	P	D	T	N	S	P	V	H	D	V	S	S	E	I	P	D	R	A	W	S	S	G	F	E	W	I	T	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	K	T	V	W	F	V	A	S	V	K	M	S	N	E	I	A	Q	C	L	Q	R	A	G	K	R	V	I
Template Known Secondary structure				S	S				S	S											S	S			S	S							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S							S	S													T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.																			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.																					.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	T	G	D	V	A	Q	K	K	R	L	R	I	L	D	E	F	T	R	G	D	L	D	I	L	V	A	T	D	V	A	A	R	G	L	H	I	P	A	V	T	H	V	F	N	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	D	D	C	E	D	Y	V	H	R	I
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																							.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.																							.
Template Sequence		Q	L	N	R	K	S	Y	D	T	E	Y	P	K	.	.	.	.	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	E	M	G	A	N	F	G	.	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	D	E	G	E	G	R	V	I	L	S	V	P	S	A	I	T	S	A	S	A	A	Q	R	R
Template Known Secondary structure					S	S	S					G	G	G	.	.	.	.	G	G	T				S						G	G	G	G	T	T					.		S																S	T	T								S
Template Predicted Secondary structure															.	.	.	.																							.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	T	G	R	A	G	A	S	G	H	S	I	S	L	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	V	G	R	N	P	S	Q	I	G	D	E	Y	H	Y	G
Template Known Secondary structure		T	T	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions