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Job DescriptionP0A8J8
Confidence100.00%DateThu Jan 5 11:08:00 GMT 2012
Rank1Aligned Residues382
% Identity32%Templatec2db3D_
PDB info PDB header:hydrolase/rnaChain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRK
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Template Sequence  SDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELE. .
Template Known Secondary structure  SS




SSTTSS


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   238.240.........250.........260.........270.........280.........290.........300.........310.....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  VNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQV
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Template Sequence  LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRF
Template Known Secondary structure  TTB
S
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   316...320.........330.........340.........350.........360.........370.........380.........390.....
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  VVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE
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Template Sequence  VVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY
Template Known Secondary structure  TTST
TTS
SS
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GGG
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   396...400.........410.........420.........430.........440.........450.........460.........470.....
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  EKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLH
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Template Sequence  AKRSKLIEIL. SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD
Template Known Secondary structure  G.

TT
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   476...480..... ....490.........500.........510.........520.........530.........540.........550....
 
   322.......330.........340.........350.........360. ........370.........380......
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Query Sequence  IPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLAC. EEYALNLPAIETYIGHSIPVSKYNP
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Template Sequence  IKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL
Template Known Secondary structure 
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   555....560.........570.........580.........590.........600.........610.........620
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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