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Job DescriptionP0A8J8
Confidence100.00%DateThu Jan 5 11:08:00 GMT 2012
Rank9Aligned Residues362
% Identity31%Templatec1hv8B_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40....... ..50.........60.........70.........80....
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Query Sequence  LTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGR. DVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQ
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Template Sequence  VEYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV. . . . . . . . NENNG
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SSGGGSS

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   3......10.........20.........30.........40.........50.........60......... 70....
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  PRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL
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Template Sequence  IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNAN. IVVGTPGRILDHINRGTLNLKNVKYFIL
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   75....80.........90.........100.........110.........120..... ....130.........140.........150...
 
   165....170.........180.........190.........200.........210.........220.........230.........240....
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Query Sequence  DEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKM
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Template Sequence  DEADEXLNXGFIKDVEKILNACNKD. . KRILLFSATXPREILNLAKKYXGDYSFIKAKINANIEQSYVEV. . . . . NENER
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   154.....160.........170........ .180.........190.........200.........210.........220. .....
 
   245....250.........260.........270.........280.........290.........300.........310.........320....
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Query Sequence  RLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPA
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Template Sequence  FEALCRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVND
Template Known Secondary structure 
STT


SSTTTT


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   227..230.........240.........250.........260.........270.........280.........290.........300......
 
   325....330.........340.........350.........360.........370.........380...
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Query Sequence  VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK
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Template Sequence  LNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYIERAXKLKIKKLK
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B
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   307..310.........320.........330.........340.........350.........360.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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