Job Description P0A8J8 Confidence 100.00% Date Thu Jan 5 11:08:00 GMT 2012 Rank 18 Aligned Residues 332 % Identity 20% Template c1gm5A_ PDB info PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Resolution 3.24 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure															.																					.	.	.	.	.	.
Query SS confidence															.																					.	.	.	.	.	.
Query Sequence		F	A	L	H	P	K	V	V	E	A	L	E	K	.	K	G	F	H	N	C	T	P	I	Q	A	L	A	L	P	L	T	L	A	G	.	.	.	.	.	.	R	D	V	A	G	Q	A	Q	T	G	T	G	K	T	M	A	F	L	T	S	T	F	H	Y	L	L	S	H	P	A	I	A	D	R	K	V	N	Q	P	R
Query Conservation															.																					.	.	.	.	.	.
Alig confidence															.				.																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	E	G	K	L	A	E	E	F	I	K	S	L	P	F	.	K	L	T	N	A	Q	K	R	A	H	Q	E	I	R	N	D	M	I	S	E	K	P	M	N	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	Q	L	A	I	L	D	N	Y	.	.	.	.	.	.	.	.	.	.	E	A	G	F	Q
Template Known Secondary structure						T										S	S	S	.																			S	S	S										S	S	S	S														.	.	.	.	.	.	.	.	.	.			T	S
Template Predicted Secondary structure																			.																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.											.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		A	L	I	M	A	P	T	R	E	L	A	V	Q	I	H	A	D	A	E	P	L	A	E	A	T	G	L	K	L	G	L	A	Y	G	G	D	G	Y	D	K	Q	L	K	V	L	E	S	.	.	.	.	G	V	D	I	L	I	G	T	T	G	R	L	I	D	Y	A	K	Q	N	H	I	N	L	G	A	I	Q	V	V
Query Conservation																																																	.	.	.	.
Alig confidence																																																	.	.	.	.																	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		T	A	F	M	V	P	T	S	I	L	A	I	Q	H	Y	R	R	T	V	E	S	F	S	K	F	N	I	H	V	A	L	L	I	G	A	T	T	P	S	E	K	E	K	I	K	S	G	L	R	N	G	Q	I	D	V	V	I	G	T	H	A	L	I	Q	E	D	V	.	.	.	.	.	H	F	K	N	L	G	L	V
Template Known Secondary structure							S																	T		S	S								S	S	S														S	S									T	T							.	.	.	.	.			S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.						.	.	.	490	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	D	E	A	D	R	M	Y	D	L	G	F	I	K	D	I	R	W	L	F	R	R	M	P	P	A	N	Q	R	L	N	M	L	F	S	A	T	L	S	Y	R	V	R	E	L	A	F	E	Q	M	N	N	A	E	Y	I	E	V	E	P	E	Q	K	T	G	H	R	I	K	E	E	L	F	Y	P	S	N	E	E
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template Sequence		I	I	D	E	Q	H	R	F	E	A	.	.	.	.	.	.	.	.	.	.	.	.	L	M	N	K	G	K	M	V	D	T	L	V	M	S	A	T	P	I	P	R	S	M	A	L	A	F	Y	G	D	L	D	V	T	V	I	D	E	M	P	P	G	R	K	E	V	.	.	.	Q	T	M	L	V	P	M	D	R	V
Template Known Secondary structure					S							.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S									S	S											T			S	S									S	S					.	.	.							S	S	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template SS confidence
		495	.	.	.	.	500	.	.	.	.													.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.				550	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	R	L	L	Q	T	L	I	E	E	E	W	P	D	R	A	I	I	F	A	N	T	K	H	R	C	E	E	I	W	G	H	L	A	A	D	G	H	R	V	G	L	L	T	G	D	V	A	Q	K	K	R	L	R	I	L	D	E	F	T	R	G	D	L	D	I	L	V	A	T	D	V	A	A	R	G	L	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	V	Y	E	F	V	R	Q	E	V	M	R	G	G	Q	A	F	I	V	Y	P	L	I	K	S	A	V	E	M	Y	E	Y	L	S	K	E	V	F	K	L	G	L	M	H	G	R	L	S	Q	E	E	K	D	R	V	M	L	E	F	A	E	G	R	Y	D	I	L	V	S	T	T	V	I	E	V	G	I	D	V
Template Known Secondary structure												T	T	T	S			B			B													S	G	G	G	S				B					S	S	S			S		S								T	T	T	S	S	S	B				S	S				S		S
Template Predicted Secondary structure
Template SS confidence
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		P	A	V	T	H	V	F	N	Y	D	L	P	D	.	D	C	E	D	Y	V	H	R	I	G	R	T	G	R	A	G	A	S	G	H	S	I	S	L	A	C	E	E	Y	A	L	N	L	P	A	I	E	T	Y	I	G
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		P	R	A	N	V	M	V	I	E	N	P	E	R	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	G	Q	E	A	Y	C	F	L	V	V	G	D	V	G	E	E	A	M	E	R	L	R	F	F	T	L
Template Known Secondary structure		T	T						B		S		S	S	S		T	T								T	S			S	S	T	T									S														T
Template Predicted Secondary structure
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions