Job Description P0A8J8 Confidence 99.92% Date Thu Jan 5 11:08:00 GMT 2012 Rank 80 Aligned Residues 264 % Identity 22% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	D	V	A	G	Q	A	Q	T	G	T	G	K	T	M	A	F	L	T	S	T	F	H	Y	L	L	S	H	P	A	I	A	D	R	K	V	N	Q	P	R	A	L	I	M	A	P	T	R	E	L	A	V	Q	I	H	A	D	A	E	P	L	A	E	A	T	G	L	K	L	G	L	A	Y	G	G	D	G	Y
Query Conservation
Alig confidence																		.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	.	.	T	K	V	P	A	A	Y	A	.	.	.	.	.	.	.	.	.	.	.	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	D	P	N	I	R	T	G	V	R	T	I	T	T	G
Template Known Secondary structure		S										T	T	S		T	T	.	.	T								.	.	.	.	.	.	.	.	.	.	.		T	T								S																									S	S
Template Predicted Secondary structure																		.	.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.			.	.	.	.	.	.	.	.												1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	Q	L	K	V	L	E	S	G	V	D	I	L	I	G	T	T	G	R	L	I	D	Y	A	K	Q	N	H	I	N	L	G	A	I	Q	V	V	V	L	D	E	A	D	R	M	Y	D	L	G	F	I	K	D	I	R	W	L	F	R	R	M	P	P	A	N	Q	R	L	N	M	L	F	S	A	T	L	S	Y	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.														.	.	.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.														.	.	.																											.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	P	V	T	Y	S	T	Y	G	K	F	L	A	.	.	.	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	.	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		S												.	.	.	T	T	S			T	T	S		S					T	T	T	T			S						.									T	T	T	T	T		S							S	S		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.														.	.	.																											.
Template SS confidence
												1263	.	.	.	.	.	.	1270	.	.	.	.	.				.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.		.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	E	L	A	F	E	Q	M	N	N	A	E	Y	I	E	V	E	P	E	Q	K	T	G	H	R	I	K	E	E	L	F	Y	P	S	N	E	E	K	M	R	L	L	Q	T	L	I	E	E	E	W	P	D	R	A	I	I	F	A	N	T	K	H	R	C	E	E	I	W	G	H	L	A	A	D	G	H	R	V	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	V	P	H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	R	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	S	G	L	G	I	N	A	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T								S		S	S				T	T					G	G	G	T	S	S	S							S	S														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					1329	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330									.	.	.														.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	T	G	D	V	A	Q	K	K	R	L	R	I	L	D	E	F	T	R	G	D	L	D	I	L	V	A	T	D	V	A	A	R	G	L	H	I	P	A	V	T	H	V	F	N	.	.	.	.	.	.	.	.	Y	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	D	C	E	D	Y	V	H	R
Query Conservation																																																.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.																					.								.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																					.
Template Sequence		A	Y	Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	.	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R
Template Known Secondary structure					T	T	S		G	G	G	S	.	.	.	.	.	.	.		S	S	S	S							T	T								.			S																		S	S	S											B
Template Predicted Secondary structure													.	.	.	.	.	.	.																					.
Template SS confidence
		1390	.	.	.	.	.	.	.	.	.	1400								.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420		.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	R	T	G	R	A	G	A	S	G	H	S	I	S	L	A	C	E	E
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		R	G	R	T	G	R	.	G	R	R	G	I	Y	R	F	V	T	P	G	E
Template Known Secondary structure			T	T	S		S	.	S	S							S
Template Predicted Secondary structure								.
Template SS confidence
		1462	.	.	.	.	.		.	.	1470	.	.	.	.	.	.	.	.	.	1480

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions