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Job DescriptionP0A8J8
Confidence99.97%DateThu Jan 5 11:08:00 GMT 2012
Rank48Aligned Residues269
% Identity22%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110.........120....
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Query Sequence  AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGY
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Template Sequence  SFQVAHLHAPTGSGKSTKVPAAYA. . . . . . . . . . . . . AQGYKVLVLNPSVAATLGFGAYMSKAH. . . GVDPNIRTGV. . .
Template Known Secondary structure  S


TTS
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   196...200.........210......... 220.........230.........240...... ...250......
 
   125....130.........140.........150.........160.........170.........180.........190.........200....
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Query Sequence  DKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYR
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Template Sequence  . . . . RTITTGSPITYSTYGKFLA. . . . DGGSGGAYDIIICDECHSTDATSI. LGIGTVLDQAETAGARLVVLATATPPGS
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   257..260.........270..... ....280.........290......... 300.........310.........320.......
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  VRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVG
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Template Sequence  . . . . . . . . . . . . . . . . . . . VTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAV
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TT

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   329330.........340.........350.........360.........370.........380.........
 
   285....290.........300.. .......310.........320 .........330.........340.........350.....
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Query Sequence  LLTGDVAQKKRLRILDEF. . . . . . . TRGDLDILVATDVAARGL. . HIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH
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Template Sequence  AYYRGLDVSVIPTSGDVVVVATDALFTGDFDSVIDCNTVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR. GKPGI
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   390.........400.........410.........420.........430.........440.........450.........460... .....
 
   356...360.
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Query Sequence  SISLAC
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Template Sequence  YRFVAP
Template Known Secondary structure  S
S
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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