Job Description P0AFJ5 Confidence 99.84% Date Thu Jan 5 11:26:30 GMT 2012 Rank 76 Aligned Residues 202 % Identity 9% Template c3klnC_ PDB info PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst Resolution 3.08 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		A	R	R	I	L	V	V	E	D	E	A	P	I	R	E	M	V	C	F	V	L	E	Q	N	G	F	Q	P	V	E	A	E	D	Y	D	S	A	V	N	Q	L	.	.	.	N	E	P	W	P	D	L	I	L	L	D	W	M	L	P	G	G	S	G	I	Q	F	I	K	H	L	K	R	E	S	M	T	R	D	I	P
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.																														.
Template Conservation																																																																											.
Template Sequence		K	L	N	V	R	M	L	S	D	V	C	M	Q	S	R	L	L	K	E	A	L	E	S	K	L	P	L	A	L	E	I	T	P	F	S	E	L	W	L	E	E	N	K	P	E	S	R	S	I	Q	M	L	V	I	D	Y	S	R	I	S	D	D	V	L	T	D	Y	S	S	F	K	H	I	.	S	C	P	D	A	K
Template Known Secondary structure		S							S			S														S	S								G	G	G	G	G	G	T	T	T		S	G	G	G	G								G	G	G			T	T	T											.			T	T
Template Predicted Secondary structure																																																																											.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	M	L	T	A	R	G	E	E	E	D	R	V	R	G	L	E	T	G	A	D	D	Y	I	T	K	P	F	S	P	K	E	L	V	A	R	I	K	A	V	M	R	R	I	S	P	M	A	V	E	E	V	I	E	M	Q	G	L	S	L	D	P	T	S	H	R	V	M	A	G	E	E	P	L	E	M	G	P	T
Query Conservation
Alig confidence																																																								.	.
Template Conservation																																																								.	.
Template Sequence		E	V	I	I	N	C	P	Q	D	I	E	H	K	L	L	F	K	W	N	N	L	A	G	V	F	Y	I	D	D	D	M	D	T	L	I	K	G	M	S	K	I	L	Q	D	E	M	W	L	T	R	K	L	A	Q	.	.	E	Y	I	L	H	Y	R	A	G	N	S	V	V	T	S	Q	M	Y	A	K	L	T	K	R
Template Known Secondary structure									S	S			G	G	G	G	G	G	S	T	T							T	T															T	T			B								.	.									T							T	T	G	G	G	S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	K	L	L	H	F	F	M	T	H	P	E	R	V	Y	S	R	E	Q	L	L	N	H	V	W	G	T	N	V	Y	V	E	D	R	T	V	D	V	H	I	R	R	L	R	K	A	L	E	P	G	G	H	D	R	M	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	Q	I	I	K	L	L	G	S	G	A	.	.	.	.	.	.	.	.	.	S	N	I	E	I	A	D	K	L	F	V	S	E	N	T	V	K	T	H	L	H	N	V	F	K	K	I	N	A	K	N	R	L	Q	A	L
Template Known Secondary structure											T	T		.	.	.	.	.	.	.	.	.							T	T	T	T																		T		S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.										.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions