Job Description P0AFJ5 Confidence 99.80% Date Thu Jan 5 11:26:30 GMT 2012 Rank 100 Aligned Residues 120 % Identity 28% Template c3h5iA_ PDB info PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																															.												.
Query SS confidence																																															.												.
Query Sequence		R	R	I	L	V	V	E	D	E	A	P	I	R	E	M	V	C	F	V	L	E	Q	N	G	F	Q	P	V	E	A	E	D	Y	D	S	A	V	N	Q	L	N	E	P	W	P	.	D	L	I	L	L	D	W	M	L	P	G	.	G	S	G	I	Q	F	I	K	H	L	K	R	E	S	M	T	R	D	I	P	V	V
Query Conservation																																															.												.
Alig confidence																																															.												.														.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		K	K	I	L	I	V	E	D	S	K	F	Q	A	K	T	I	A	N	I	L	N	K	Y	G	Y	T	V	E	I	A	L	T	G	E	A	A	V	E	K	V	S	G	G	W	Y	P	D	L	I	L	M	D	I	E	L	G	E	G	M	D	G	V	Q	T	A	L	A	I	Q	Q	I	.	.	.	S	E	L	P	V	V
Template Known Secondary structure									S															T	T							S	S										T	T				S						S	S		S	S	S														.	.	.
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	T	A	R	G	E	E	E	D	R	V	R	G	L	E	T	G	A	D	D	Y	I	T	K	P	F	S	P	K	E	L	V	A	R	I	K	A	V	M	R	R	I	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	T	A	H	T	E	P	A	V	V	E	K	I	R	S	V	T	A	Y	G	Y	V	M	K	S	A	T	E	Q	V	L	I	T	I	V	E	M	A	L	R	L	Y	E	A
Template Known Secondary structure					S	S	S	S					G	G	G	G	G	S								T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions