Job Description P0AFJ5 Confidence 54.91% Date Thu Jan 5 11:26:30 GMT 2012 Rank 286 Aligned Residues 90 % Identity 10% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure											.	.	.																								.	.	.	.	.	.	.	.																																					.
Query SS confidence											.	.	.																								.	.	.	.	.	.	.	.																																					.
Query Sequence		R	R	I	L	V	V	E	D	E	.	.	.	A	P	I	R	E	M	V	C	F	V	L	E	Q	N	G	F	Q	P	V	E	A	E	D	.	.	.	.	.	.	.	.	Y	D	S	A	V	N	Q	L	N	E	P	W	P	D	L	I	L	L	D	W	M	L	P	G	G	S	G	I	Q	F	I	K	H	L	K	R	.
Query Conservation											.	.	.																								.	.	.	.	.	.	.	.																																					.
Alig confidence											.	.	.																								.	.	.	.	.	.	.	.										.	.																										.
Template Conservation																																																						.	.
Template Sequence		L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	.	.	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I
Template Known Secondary structure										S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T							T	T	S	.	.	S		S									S		S	S											T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
			71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	S	M	T	R	D	I	P	V	V	M	L	T	A	R	G	E	E	E	D	R	V	R	G
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A
Template Known Secondary structure		T	S	S	S			S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions