Job Description P0AFJ5 Confidence 99.67% Date Thu Jan 5 11:26:30 GMT 2012 Rank 125 Aligned Residues 118 % Identity 30% Template c2qsjB_ PDB info PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.																						.
Query SS confidence																											.	.																						.
Query Sequence		M	A	R	R	I	L	V	V	E	D	E	A	P	I	R	E	M	V	C	F	V	L	E	Q	N	.	.	G	F	Q	P	V	E	A	E	D	Y	D	S	A	V	N	Q	L	N	E	P	W	.	P	D	L	I	L	L	D	W	M	L	P	G	G	S	G	I	Q	F	I	K	H	L	K	R	E	S	M	T	R	D	I
Query Conservation																											.	.																						.
Alig confidence				.																							.	.																						.													.	.	.	.	.	.									.	.
Template Conservation				.																																																											.	.	.	.	.	.									.	.
Template Sequence		L	T	.	V	V	L	I	V	D	D	H	H	L	I	R	A	G	A	K	N	L	L	E	G	A	F	S	G	M	R	V	E	G	A	E	T	V	S	D	A	L	A	F	L	E	A	D	N	T	V	D	L	I	L	L	D	V	A	I	D	G	.	.	.	.	.	.	L	V	R	L	K	R	F	D	.	.	P	S	N
Template Known Secondary structure				.							S																	T	T							S	S										T	T				S											.	.	.	.	.	.									.	.	T	T	S
Template Predicted Secondary structure				.																																																											.	.	.	.	.	.									.	.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.			.	70	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	V	M	L	T	A	R	G	E	E	E	D	R	V	R	G	L	E	T	G	A	D	D	Y	I	T	K	P	F	S	P	K	E	L	V	A	R	I	K	A	V	M	R	R	I	S	P	M	A	V	E
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		A	V	A	L	I	S	G	E	H	.	.	E	L	I	R	A	A	L	E	A	G	A	D	G	F	I	P	K	S	A	D	P	Q	V	L	I	H	A	V	S	L	I	L	E	G	E	I	F	L	P	R	S
Template Known Secondary structure											.	.									T	T		S	B				T	T	S														T	T			B			S
Template Predicted Secondary structure											.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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