Job Description P0AFJ5 Confidence 26.68% Date Thu Jan 5 11:26:30 GMT 2012 Rank 427 Aligned Residues 124 % Identity 10% Template c2qeqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase Resolution 3.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30										.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.																	.	.	.	.									.
Query SS confidence																															.	.	.	.	.	.	.	.	.																	.	.	.	.									.
Query Sequence		A	R	R	I	L	V	V	E	D	E	A	P	I	R	E	M	V	C	F	V	L	E	Q	N	G	F	Q	P	V	.	.	.	.	.	.	.	.	.	E	A	E	D	Y	D	S	A	V	N	Q	L	N	E	P	W	.	.	.	.	P	D	L	I	L	L	D	W	.	M	L	P	G	G	S	G	I	Q	F	I	K	H
Query Conservation																															.	.	.	.	.	.	.	.	.																	.	.	.	.									.
Alig confidence																															.	.	.	.	.	.	.	.	.																	.	.	.	.									.
Template Conservation
Template Sequence		R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	G	L	P	I	R	Y	Q	T	S	A	N	G	N	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	H	R	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y
Template Known Secondary structure		T								S	S												T	T	S											S																	S	S	S						S					S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	E	S	M	T	R	D	I	P	V	V	M	L	T	A	R	G	E	E	E	D	R	V	R	G	L	E	T	G	A	D	D	Y	I	T	K	P	F	S	P	K	E	L	V	A	R	I	K	A	V	M	R	R	I	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	T	R	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	T	S	D	P	F	P	E	S	N	A	P	I	S	D	L	Q	T	E	I	P	D	R	A	W	N	S	G	Y	E	W	I	T	E	Y	I	G	K
Template Known Secondary structure								T	T	S								S	S		T	T				S	S				S	S											S	S			S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions