Job Description P0AFJ5 Confidence 82.63% Date Thu Jan 5 11:26:30 GMT 2012 Rank 200 Aligned Residues 93 % Identity 24% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		2	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure												.	.	.																									.	.	.	.	.	.	.																																				.
Query SS confidence												.	.	.																									.	.	.	.	.	.	.																																				.
Query Sequence		A	R	R	I	L	V	V	E	D	E	.	.	.	A	P	I	R	E	M	V	C	F	V	L	E	Q	N	G	F	Q	P	V	E	A	E	D	Y	.	.	.	.	.	.	.	D	S	A	V	N	Q	L	N	E	P	W	P	D	L	I	L	L	D	W	M	L	P	G	G	S	G	I	Q	F	I	K	H	L	K	R	.
Query Conservation												.	.	.																									.	.	.	.	.	.	.																																				.
Alig confidence												.	.	.																									.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L
Template Known Secondary structure		T										S	S																T								T	T																		T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
			71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	S	M	T	R	D	I	P	V	V	M	L	T	A	R	G	E	E	E	D	R	V	R	G
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A
Template Known Secondary structure								S								S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions