Job Description P0A812 Confidence 98.77% Date Thu Jan 5 11:06:35 GMT 2012 Rank 106 Aligned Residues 250 % Identity 15% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		I	F	G	P	P	G	L	G	K	T	T	L	A	N	I	V	A	N	E	M	G	V	N	L	R	T	T	S	G	P	V	L	E	K	A	G	D	L	A	A	M	L	T	N	L	E	.	P	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		F	F	G	P	A	G	T	G	K	T	E	T	V	K	A	F	G	Q	N	L	G	R	V	V	V	V	F	N	C	D	D	S	F	D	Y	Q	V	L	S	R	L	L	V	G	I	T	Q	I	G	A	W	G	C	F	D	E	F	N	R	L	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q
Template Known Secondary structure						T	T	S	S									T	S	S											S	S	S	S		S												T	T								T	T	T	T	S	S																	T	S	T
Template Predicted Secondary structure
Template SS confidence
		1794	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.
		139	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure										.																																																																							.
Query SS confidence										.																																																																							.
Query Sequence		I	G	E	G	P	A	A	R	.	S	I	K	I	D	L	P	P	F	T	L	I	G	A	T	T	R	A	G	S	L	T	S	P	L	R	D	R	F	G	I	V	Q	R	L	E	F	Y	Q	V	P	D	L	Q	Y	I	V	S	R	S	A	R	F	M	G	L	E	M	S	D	D	G	A	L	E	V	A	R	R	A	.
Query Conservation										.																																																																							.
Alig confidence										.																	.	.	.	.	.															.																																			.
Template Conservation																											.	.	.	.	.															.
Template Sequence		V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	.	.	.	.	.	L	P	E	N	L	K	K	S	F	R	E	F	S	M	.	K	S	Q	S	G	T	I	A	E	M	I	L	Q	I	M	G	F	E	D	S	K	S	L	A	S	K	I	V	H	F	L	E	L	L	S
Template Known Secondary structure		T	S	S	S						S	S															.	.	.	.	.							T	T	T						.																	T	S	S
Template Predicted Secondary structure																											.	.	.	.	.															.
Template SS confidence
		1874	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.						.	1900	.	.	.	.	.	.	.	.	.	1910	.	.		.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.
											217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	R	G	T	P	R	I	A	N	R	L	L	R	R	V	R	D	F	A	E	V	K	H	D	G	T	I	S	A	D	I	A	A	Q	A	L	D	M	L	N	V	D	A	E	G	F	D	Y	M	D	R	K	L	L	L	A	V	I	D	K	F	F	G	G	P	V	G	L	D	N	L	A
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																										.	.	.												.	.																					.	.	.
Template Conservation																																				.	.	.												.	.																					.	.	.
Template Sequence		S	K	C	S	S	M	N	H	Y	H	F	G	L	R	T	L	K	G	V	L	R	N	C	S	P	L	I	S	E	F	G	E	G	E	.	.	.	K	T	V	V	E	S	L	K	R	V	I	.	.	L	P	S	L	G	D	T	D	E	L	V	F	K	D	E	L	S	K	S	K	.	.	.	A	I	V	Q	C	L	K
Template Known Secondary structure						S	S	S																							S	S		S	S	.	.	.												.	.		S	S	S	S	T	T														.	.	.
Template Predicted Secondary structure																																				.	.	.												.	.																					.	.	.
Template SS confidence
		1958	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.				.	.	.	.	.	.	.	.	2000	.	.			.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.				.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	I	G	E	E	R	E	T	I	E	D	V	L	E	P	Y	L	I	Q	Q	G	F	L	Q	R	T	P	R	G	R	M	A	T	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	G	E	E	F	L	K	K	C	M	Q	F	Y	Y	M	Q	K	T	Q	Q	A	L	I	L	V	G	K	A	G	C	G	K	T	A	T
Template Known Secondary structure																			S	S										T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions