Job Description P0A812 Confidence 99.58% Date Thu Jan 5 11:06:35 GMT 2012 Rank 87 Aligned Residues 208 % Identity 16% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		D	V	A	D	R	A	I	R	P	K	L	L	E	E	Y	V	G	Q	P	Q	V	R	S	Q	M	E	I	F	I	K	A	A	K	L	R	G	D	A	L	D	H	L	L	I	F	G	P	P	G	L	G	K	T	T	L	A	N	I	V	A	N	E	M	G	.	.	V	N	L	R	T	T	S	G	P	V	L	E	K	A
Query Conservation																																																																		.	.
Alig confidence																																		.	.	.																														.	.
Template Conservation																																		.	.	.
Template Sequence		E	E	Y	S	K	K	A	P	P	Q	E	E	I	E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	.	.	.	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E
Template Known Secondary structure					S															S														.	.	.		T	S		S								T	T	S	S																S							S	S	S	S		T	T
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		95	.	.	.	.	100																		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	L	A	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	N	L	E	P	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M	I	G	E	G	P	A	A	R	S	I	K	I	D	L	P	P	F	T	L
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.
Template Sequence		L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	.	.	.	.	.	.	.	Q	K	I	E	V	D	I	R	V
Template Known Secondary structure		T										S		S	S	S	S												T	T	T	S						T	G	G	G	S															S					B	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.								.	260	.	.	.	.	.	.	.
		158	.	160	.	.	.	.									.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																							.	.																.	.	.	.	.	.	.															.
Query SS confidence									.	.	.	.	.	.	.	.																							.	.																.	.	.	.	.	.	.															.
Query Sequence		I	G	A	T	T	R	A	.	.	.	.	.	.	.	.	G	S	L	T	S	P	L	R	D	R	F	G	I	V	Q	R	L	E	F	Y	Q	V	.	.	P	D	L	Q	Y	I	V	S	R	S	A	R	F	M	G	.	.	.	.	.	.	.	L	E	M	S	D	D	G	A	L	E	V	A	R	R	.	A	R	G	T
Query Conservation									.	.	.	.	.	.	.	.																							.	.																.	.	.	.	.	.	.															.
Alig confidence									.	.	.	.	.	.	.	.																							.	.																.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K	Q	E	W	K	G	N
Template Known Secondary structure						S	S								T	T	S	S									T	S								G	G	G	S	T	T																	T	T						B										T				T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	I	A	N	R	L	L	R	R	V	R	D	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	E	L	K	N	L	I	E	R	A	V	I	L	C
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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