Job Description P0A812 Confidence 99.93% Date Thu Jan 5 11:06:35 GMT 2012 Rank 32 Aligned Residues 269 % Identity 17% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.
Query Sequence		E	A	D	R	L	I	S	A	G	T	T	L	P	E	D	V	A	D	R	A	I	R	P	K	L	L	E	E	Y	V	G	Q	P	Q	V	R	S	Q	M	E	I	F	I	K	A	.	.	.	.	.	.	.	.	A	K	L	R	G	D	A	L	D	H	L	L	I	F	G	P	P	G	L	G	K	T	T	L	A	N	I
Query Conservation																																															.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	R	W	A	L	S	Q	S	N	P	S	A	L	R	E	T	V	V	E	V	P	Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A
Template Known Secondary structure														S			S										T	T	T	T		S																								T	S						S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.															.	.	.
Query SS confidence																				.	.	.	.	.															.	.	.
Query Sequence		V	A	N	E	M	G	V	N	L	R	T	T	S	G	P	V	L	E	.	.	.	.	.	K	A	G	D	L	A	A	M	L	T	N	L	E	P	.	.	.	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M	I	G	E	G	P	A	A	R
Query Conservation																				.	.	.	.	.															.	.	.
Alig confidence																				.	.	.	.	.															.	.	.																					.	.
Template Conservation																																																														.	.
Template Sequence		I	A	N	E	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	.	.	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M
Template Known Secondary structure						T	T																T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T	.	.		S	S			S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590			.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.
Predicted Secondary structure																													.	.																																														.
Query SS confidence																													.	.																																														.
Query Sequence		S	I	K	I	D	L	P	P	F	T	L	I	G	A	T	T	R	A	G	S	L	T	S	P	L	R	D	.	.	R	F	G	I	V	Q	R	L	E	F	Y	Q	V	P	D	L	Q	Y	I	V	S	R	S	A	R	F	M	G	L	E	M	S	D	D	G	A	L	E	V	A	R	R	A	R	G	.	T	P	R	I	A
Query Conservation																													.	.																																														.
Alig confidence																													.	.																																			.											.
Template Conservation																																																																	.
Template Sequence		D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	.	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L
Template Known Secondary structure			S	S		T	T	S	S								S		G	G	G			G	G	G	T	S	T	T	T	S											T	T										T	T	T	S		B		S	S			.					T	T	T		S	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.		.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.						.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		N	R	L	L	R	R	V	R	D	F	A	.	.	.	.	.	E	V	K	H	D	G	T	I	S	A	D	I	A	A	Q	A	L	D	M	L	N	V	D	A	E	G	F	D	Y	M	D	R	K	L	L	L	A	V	I	D	K	F	F
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																					.	.	.
Template Conservation																																						.	.	.
Template Sequence		T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	.	.	.	R	R	S	V	S	D	N	D	I	R	K	Y	E	M	F	A	Q	T	L	Q
Template Known Secondary structure										T	T														B										T	T		.	.	.			S	S
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.				.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions