Job Description P0A812 Confidence 99.93% Date Thu Jan 5 11:06:35 GMT 2012 Rank 31 Aligned Residues 216 % Identity 13% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

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		18	.	20	.	.	.	.	.	.		.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure											.					.
Query SS confidence											.					.
Query Sequence		V	A	D	R	A	I	R	P	K	.	L	L	E	E	.	Y	V	G	Q	P	Q	V	R	S	Q	M	E	I	F	I	K	A	A	K	L	R	G	D	A	L	D	H	L	L	I	F	G	P	P	G	L	G	K	T	T	L	A	N	I	V	A	N	E	M	G	V	N	L	R	T	T	S	G	P	V	L	E	K	A	G
Query Conservation											.					.
Alig confidence											.					.																	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		S	L	P	V	H	L	P	D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	.	.	.	.	.	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A
Template Known Secondary structure									T	T		S	T	T	T	S																	.	.	.	.	.	T		S		S							S	T	T	S	S															T	T								G	G	G	G	G
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	L	A	A	M	L	T	N	L	E	P	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M	I	G	E	G	P	A	A	R	S	I	K	I	D	L	P	P	F	T	L	I	G	A	T	T	R	A	G	S	L	T	S	P	L	R	D	.	.
Query Conservation																																																																																.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	S	T	A	L	L	E	G	L	E	Q	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	V	A	E	Q	K	R	G	S	L	I	V	S	A	S	A	S	P	X	E	A	G	F	V	L	P	D	L
Template Known Secondary structure		G	S		G	G	G	G	T	T	G	G	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.						T	G	G	G	G	T	T																				S								S	S		T	T	T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.														.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
						174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	F	G	I	V	Q	R	L	E	F	Y	Q	V	P	D	L	Q	Y	I	V	S	R	S	A	R	F	M	G	L	E	M	S	D	D	G	A	L	E	V	A	R	R	A	R	G	T	P	R	I	A	N	R	L	L	R	R	V	R	D	F	A	E	V	K	H	D	G	T	I	S	A	D	I	A	A	Q
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																																				.
Template Conservation																																																																									.
Template Sequence		V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	K	L	A	A	L	Q	R	R	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	X	A	R	D	L	R	T	L	F	D	V	L	D	R	L	D	K	A	S	X	V	H	Q	R	K	.	L	T	I	P	F	V	K	E
Template Known Secondary structure								S										G	G	G												T	T															T	T	T																				T			.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.
		250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	L	R
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		238	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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