Job Description P0A812 Confidence 99.94% Date Thu Jan 5 11:06:35 GMT 2012 Rank 29 Aligned Residues 187 % Identity 21% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I	R	P	K	L	L	E	E	Y	V	G	Q	P	Q	V	R	S	Q	M	E	I	F	I	K	A	A	K	L	R	G	D	A	L	D	H	L	L	I	F	G	P	P	G	L	G	K	T	T	L	A	N	I	V	A	N	E	M	G	V	N	L	R	T	T	S	G	P	V	L	E	K	A	G	D	L	A	A	M
Query Conservation
Alig confidence																															.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		E	K	Y	R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	K	N	.	.	.	.	.	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D
Template Known Secondary structure				T			S	S	G	G	G			S									G	G	G	T	T	T	T		.	.	.	.	.										T	T	S	S														T	T			T	T	T						T	T	S	T	T	S	T	T
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		101	.														.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	E	P	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M	I	G	E	G	P	A	A	R	S	I	K	I	D	L	P	P	F	T	L	I	G	A	T	T	R	A	G	S	L
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	R	H	K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	S	C	R	F	I	L	S	C	N	Y	V	S	R
Template Known Secondary structure		T	S	S									S			T	T	T										T	G	G	G	S							T	T	G	G	G	T	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S								S		G	G	G
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	P	L	R	D	R	F	G	I	V	Q	R	L	E	F	Y	Q	V	P	D	L	Q	Y	I	V	S	R	S	A	R	F	M	G	L	E	M	S	D	D	G	A	L	E	V	A	R	R	A	R	G	T	P	R	I	A	N	R	L	L	R	R	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A
Template Known Secondary structure		S						T	T																								T	T	T			B													T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions