Job Description P0A812 Confidence 99.46% Date Thu Jan 5 11:06:35 GMT 2012 Rank 92 Aligned Residues 289 % Identity 15% Template c1z6tC_ PDB info PDB header:apoptosis Chain: C: PDB Molecule:apoptotic protease activating factor 1; PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp Resolution 2.21 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.																.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.																.	.	.
Query Sequence		P	K	L	L	E	E	Y	V	G	Q	P	Q	V	R	S	Q	M	E	I	F	I	K	A	A	K	L	R	G	D	A	L	D	H	L	L	I	F	G	P	P	G	L	G	K	T	T	L	A	N	I	V	A	N	E	M	.	.	.	.	.	.	.	G	V	N	L	R	T	T	S	G	P	V	L	E	K	A	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.																.	.	.
Alig confidence																									.	.	.																														.	.	.	.	.	.	.																.	.	.
Template Conservation																									.	.	.
Template Sequence		P	Q	R	P	V	V	F	V	T	R	K	K	L	V	N	A	I	Q	Q	K	L	S	K	.	.	.	L	K	G	E	P	G	W	V	T	I	H	G	M	A	G	C	G	K	S	V	L	A	A	E	A	V	R	D	H	S	L	L	E	G	C	F	P	G	G	V	H	W	V	S	V	G	K	Q	D	K	S	G	L	L
Template Known Secondary structure						S	S																T	T	.	.	.	S	T	T	S										T	T	S	S																				T	T									S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	L	A	A	M	L	T	N	L	E	P	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M	I	G	E	G	P	A	A	R	S	I	K	I	D	L	P	P	F	T	L	I	G	A	T	T	R	A	G	S	L	T	S	P	L	R	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	L	Q	N	L	C	T	R	L	D	Q	D	E	S	F	S	Q	R	L	P	L	N	I	E	E	A	K	D	R	L	R	I	L	M	L	R	K	H	P	R	S	L	L	I	L	D	D	V	W	D	S	W	V	L	K	A	F	D	S	Q	C	Q	I	L	L	T	T	R	D	K	S	V	T	D	S	V	M	G	P
Template Known Secondary structure												T	T	T			S		S	S				S															T		T	T																T	T		S	S								S		G	G	G	G	T	T			S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.														.	.	.	.	240	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	I	V	Q	R	L	E	F	Y	Q	V	P	D	L	Q	Y	I	V	S	R	S	A	R	F	M	G	L	E	M	S	D	D	G	A	L	E	V	A	R	R	A	R	G	T	P	R	I	A	N	R	L	L	R	R	V	R	D	F	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	H	D	G	T
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		K	Y	V	V	P	V	E	S	S	L	G	K	E	K	G	L	E	I	L	S	L	F	V	N	M	K	K	A	D	L	P	E	Q	A	.	H	S	I	I	K	E	C	K	G	S	P	L	V	V	S	L	I	G	A	L	L	R	D	F	P	N	R	W	E	Y	Y	L	K	Q	L	Q	N	K	Q	F	K	R	I	R	K
Template Known Secondary structure									S	S															T	S		G	G	G	S		T			.								T	T															S	T	T											S						S	S
Template Predicted Secondary structure																																				.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	A	D	I	A	A	Q	A	L	D	M	L	N	V	D	A	E	G	F	D	Y	M	D	R	K	L	L	L	A	V	I	D	K	F	F	G	G	P	V	G	L	D	N	L	A	A	A	I	G	E	E	R	E	T	I	E	D	V	L	E	P	Y	L	I	Q	Q	G	F	L	Q	R	T	P	R	G	R
Query Conservation
Alig confidence																																																																.
Template Conservation																																																																.
Template Sequence		S	S	S	Y	D	Y	E	A	L	D	E	A	M	S	I	S	V	E	M	L	R	E	D	I	K	D	Y	Y	T	D	L	S	I	L	Q	K	D	V	K	V	P	T	K	V	L	C	I	L	W	D	M	E	T	E	E	V	E	D	I	L	Q	E	.	F	V	N	K	S	L	L	F	C	D	R	N	G	K
Template Known Secondary structure			S	S																T	S											G	G	G			T	T													T													.				T	T	S	S						T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions