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Job DescriptionP0A812
Confidence99.94%DateThu Jan 5 11:06:35 GMT 2012
Rank22Aligned Residues190
% Identity20%Templatec1sxjB_
PDB info PDB header:replicationChain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80.........90.........100
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Query Sequence  RAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAM
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Template Sequence  EKYRPQVLSDIVGNKETIDRLQQIAKDGN. . . . . MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID
Template Known Secondary structure  T

SSGGG

S
TS

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STTSSGGG
TTS

S
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   13......20.........30.........40. ........50.........60.........70.........80.......
 
   101... .....110.........120.........130.........140.........150.........160......
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Query Sequence  LTNL. . . . . . . . . . . . . . EPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS
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Template Sequence  VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY. . . . . . . . . . . . . . . . . . . SNSTRFAFACNQSN
Template Known Secondary structure  T





TT

SGGGS
TTT...................TTTS
GG
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   88.90.........100.........110.........120.........130.... .....140........
 
   167..170.........180.........190.........200.........210.........220.........230....
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Query Sequence  LTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFA
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Template Sequence  KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH
Template Known Secondary structure  GS
TTS




T

B
TT
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   149150.........160.........170.........180.........190.........200.........210......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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