Job Description P0A812 Confidence 99.68% Date Thu Jan 5 11:06:35 GMT 2012 Rank 80 Aligned Residues 191 % Identity 16% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.										.
Predicted Secondary structure																									.																																															.	.	.	.	.	.	.	.	.
Query SS confidence																									.																																															.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	V	R	S	Q	M	E	I	F	I	K	A	A	K	L	R	G	D	A	L	D	H	.	L	L	I	F	G	P	P	G	L	G	K	T	T	L	A	N	I	V	A	N	E	M	G	V	N	L	R	T	T	S	G	P	V	L	E	K	A	G	D	L	A	A	M	L	T	N	.	.	.	.	.	.	.	.	.	L
Query Conservation																									.																																															.	.	.	.	.	.	.	.	.
Alig confidence																									.																																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K
Template Known Secondary structure																			S	S		S									S	T	T	S	S															S							G	G	G	S	T	T																			T
Template Predicted Secondary structure
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		E	P	H	D	V	L	F	I	D	E	I	H	R	L	S	P	V	V	E	E	V	L	Y	P	A	M	E	D	Y	Q	L	D	I	M	I	G	E	G	P	A	A	R	S	I	K	I	D	L	P	P	F	T	L	I	G	A	T	T	R	A	G	S	L	T	S	P	L	R	D	.	R	F	G	I	V	Q	R	L	E	F
Query Conservation																																																																							.
Alig confidence																							.	.	.	.	.																																												.
Template Conservation																							.	.	.	.	.
Template Sequence		S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	.	.	.	.	.	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	T	T	I	H	V	P	N
Template Known Secondary structure		S	S													T	T		B	T	T	T	.	.	.	.	.	T	B													T	T				S	T	T										S								T	T	G	G	G	T	S	S
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.						.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		Y	Q	V	P	D	L	Q	Y	I	V	S	R	S	A	R	F	M	G	L	E	M	S	D	D	G	A	L	E	V	A	R	R	.	A	R	G	T	P	R	I	A	N	R	L	L	R	R	V
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure																T		S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions