Job Description P0ACU5 Confidence 99.89% Date Thu Jan 5 11:19:04 GMT 2012 Rank 64 Aligned Residues 181 % Identity 14% Template c2zb9A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of tetr family transcription regulator2 sco0332 Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	K	E	K	T	R	R	S	L	V	E	A	A	F	S	Q	L	S	A	E	R	S	F	A	S	L	S	L	R	E	V	A	R	E	A	G	I	A	P	T	S	F	Y	R	H	F	R	D	V	D	E	L	G	L	T	M	V	D	E	S	G	L	M	L	R	Q	L	M	R	Q	A	R	Q	R	I	A	K	G	G
Query Conservation
Alig confidence																				.																																																				.	.	.	.	.
Template Conservation																				.																																																				.	.	.	.	.
Template Sequence		R	P	A	E	E	V	R	A	E	V	L	H	A	V	G	E	L	L	.	L	T	E	G	T	A	Q	L	T	F	E	R	V	A	R	V	S	G	V	S	K	T	T	L	Y	K	W	W	P	S	K	G	A	L	A	L	D	G	Y	F	H	A	V	E	D	T	L	A	F	P	D	.	.	.	.	.	T	G	D	V	R
Template Known Secondary structure		S																		.					G	G	G																						S	S																						.	.	.	.	.	S	S
Template Predicted Secondary structure																				.																																																				.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		S	V	I	R	T	S	V	S	T	F	M	E	F	I	G	N	N	P	.	.	N	A	F	R	L	L	L	R	E	R	S	G	T	S	A	A	F	R	A	A	V	A	R	E	I	Q	H	F	I	A	E	L	A	D	Y	L	E	L	E	N	H	M	P	R	A	F	T	E	A	Q	A	E	A	M	V	T	I	V	F	S
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		A	D	L	L	A	Q	L	R	A	F	T	H	V	M	T	R	T	P	G	G	R	I	L	T	E	L	I	G	A	A	Q	T	D	A	D	L	A	T	A	Y	R	Q	L	Y	S	A	Q	R	R	A	L	A	A	E	R	L	R	H	A	R	E	L	G	Q	I	R	P	D	V	D	V	Q	V	L	V	D	Q	L	W	G
Template Known Secondary structure																		S														T	T												T																		T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	E	A	L	D	V	G	V	E	Q	R	R	Q	L	E	E	R	L	V	L	Q	L	R	M	I	S	K	G	A
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		A	V	Y	H	R	L	L	I	P	D	E	P	V	D	D	.	.	A	F	V	T	A	L	V	T	N	L	L	D	G	V
Template Known Secondary structure									S		S	S					.	.														S
Template Predicted Secondary structure																	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions