Job Description P0ACU5 Confidence 99.86% Date Thu Jan 5 11:19:04 GMT 2012 Rank 82 Aligned Residues 188 % Identity 18% Template c2fbqA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 Resolution 1.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.									.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.
Query Sequence		K	E	K	T	R	R	S	L	V	E	A	A	F	S	Q	L	S	A	E	R	S	F	A	S	L	S	L	R	E	V	A	R	E	A	G	I	A	P	T	S	F	Y	R	H	F	R	D	V	D	E	L	G	L	T	M	V	D	E	S	G	L	M	L	R	Q	L	M	R	Q	A	R	.	.	.	.	.	.	.	.	Q
Query Conservation																																																																									.	.	.	.	.	.	.	.
Alig confidence																		.																																																							.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		Q	S	E	T	V	E	R	I	L	D	A	A	E	Q	L	F	.	A	E	K	G	F	A	E	T	S	L	R	L	I	T	S	K	A	G	V	N	L	A	A	V	N	Y	H	F	G	S	K	K	A	L	I	Q	A	V	F	S	R	F	L	G	P	F	C	A	S	L	E	K	E	L	D	R	R	Q	A	K	P	E	A
Template Known Secondary structure																		.					S	T	T											T	S									T		S																															T	T
Template Predicted Secondary structure																		.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																									.	.	.	.																																						.
Query SS confidence																									.	.	.	.																																						.
Query Sequence		R	I	A	K	G	G	S	V	I	R	T	S	V	S	T	F	M	E	F	I	G	N	N	.	.	.	.	P	N	A	F	R	L	L	L	R	E	R	S	G	T	S	A	A	F	R	A	A	V	A	R	E	I	Q	H	F	I	A	E	L	A	D	Y	L	.	E	L	E	N	H	M	P	R	A	F	T	E	A	Q	A
Query Conservation																									.	.	.	.																																						.
Alig confidence																									.	.	.	.																																						.
Template Conservation
Template Sequence		Q	H	A	T	L	E	D	L	L	H	L	L	V	S	Q	A	M	A	V	K	P	R	S	G	N	D	L	S	I	F	M	R	L	L	G	L	A	F	S	Q	S	Q	G	H	L	R	K	Y	L	E	E	V	Y	G	K	V	F	R	R	Y	M	L	L	V	N	E	A	A	P	K	L	P	P	I	E	L	F	W	R	V
Template Known Secondary structure																				S			S	S	S																T	T																											S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170										.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence		E	A	M	V	T	I	V	F	S	A	G	A	E	A	L	D	.	.	.	.	.	.	.	.	.	V	G	V	E	Q	R	R	Q	L	E	E	R	L	V	L	Q	L	R	M	I	S	K	G	A	Y	Y
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	F	M	L	G	A	A	A	F	S	M	S	G	I	K	A	L	R	A	M	A	E	T	D	F	G	V	N	T	S	T	E	Q	V	M	H	L	M	V	P	F	F	A	A	G	M	R	A	E	S	G
Template Known Secondary structure														T													S																						S			S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions