Job Description P0ACU5 Confidence 99.85% Date Thu Jan 5 11:19:04 GMT 2012 Rank 97 Aligned Residues 172 % Identity 19% Template c1bjzA_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:tetracycline repressor; PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction Resolution 2.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	R	S	L	V	E	A	A	F	S	Q	L	S	A	E	R	S	F	A	S	L	S	L	R	E	V	A	R	E	A	G	I	A	P	T	S	F	Y	R	H	F	R	D	V	D	E	L	G	L	T	M	V	D	E	S	G	L	M	L	R	Q	L	M	R	Q	A	R	Q	R	I	A	K	G	G	S	V	I	R	T
Query Conservation
Alig confidence															.																																																							.	.
Template Conservation															.																																																							.	.
Template Sequence		N	R	E	S	V	I	D	A	A	L	E	L	L	.	N	E	T	G	I	D	G	L	T	T	R	K	L	A	Q	K	L	G	I	E	Q	P	T	L	Y	W	H	V	K	N	K	R	A	L	L	D	A	L	A	V	E	I	L	A	R	H	H	D	Y	S	L	P	A	A	.	.	G	E	S	W	Q	S	F	L	R	N
Template Known Secondary structure		S													.																		T	S																													T	T	S	S			T	.	.	T
Template Predicted Secondary structure															.																																																							.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	S	T	F	M	E	F	I	G	N	N	P	N	A	F	R	L	L	L	R	E	R	S	G	T	S	A	A	F	R	A	A	V	A	R	E	I	Q	H	F	I	A	E	L	A	D	Y	L	E	L	E	N	H	M	P	R	A	F	T	E	A	Q	A	E	A	M	V	T	I	V	F	S	A	G	A	E	A	L	D
Query Conservation
Alig confidence																						.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																						.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		N	A	M	S	F	R	R	A	L	L	R	Y	R	D	G	A	K	V	H	L	.	.	G	T	R	P	D	E	K	Q	Y	D	T	V	E	T	Q	L	R	F	M	T	E	.	.	.	.	.	.	.	.	.	N	G	F	S	L	R	D	G	L	Y	A	I	S	A	V	S	H	F	T	L	G	A	V	L	E	Q	Q	E
Template Known Secondary structure												T	S	T	T							.	.	T	S																				.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																						.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.										.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		171	.	.	.											.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	V	E	.	.	.	.	.	.	.	.	.	.	Q	R	R	Q	L	E	E	R	L	V	L	Q	L	R	M	I	S	K	G	A	Y	Y
Query Conservation						.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	N	L	P	P	L	L	R	E	A	L	Q	I	M	D	S	D	D	G	E	Q	A	F	L	H	G	L	E	S	L	I	R	G	F	E	V
Template Known Secondary structure																T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions