Return to main results Retrieve Phyre Job Id

Job DescriptionP0AAZ7
Confidence94.96%DateThu Jan 5 11:14:13 GMT 2012
Rank11Aligned Residues27
% Identity26%Templatec3k7aM_
PDB info PDB header:transcriptionChain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910....... ..20.........30.....
Predicted Secondary structure 






...








Query SS confidence 








. . .

















Query Sequence  IACPVCNGK. . . LWYNQEKQELICKLDNLA
Query Conservation 
 

 
   ...
        
 
  
   
Alig confidence 








...

















Template Conservation    

 

     

 
   
  

  

 
Template Sequence  LTCPECKVYPPKIVERFSEGDVVCALCGLV
Template Known Secondary structure 


STT

S






SSS
S


SSS


Template Predicted Secondary structure 


















Template SS confidence 





























   22.......30.........40.........50.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions