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Job DescriptionQ7DFU6
Confidence99.96%DateThu Jan 5 12:37:40 GMT 2012
Rank38Aligned Residues211
% Identity13%Templatec3hxkB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:sugar hydrolase; PDBTitle: crystal structure of a sugar hydrolase (yeeb) from2 lactococcus lactis, northeast structural genomics3 consortium target kr108
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   55....60.........70.........80.........90. ........100.........110.........120.........130.
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Query Sequence  YITYPSPNGHGEVRGYLVKPAKMSGKTPAVVVVHENR. . . GLNPYIEDVARRVAKAGYIALAPDGLSSVGGYPGNDDKGR
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Template Sequence  KSTFSLNDT. . . AWVDFYQL. . QNYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVXNKGTNYNFLSQN
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BTT...B

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B


STTTS

GGGSTT



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T
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   16...20.... .....30.. .......40.........50.........60.........70.........80.........90
 
   132.......140.........150.........160.........170.........180.........190...
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Query Sequence  ELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYG. . . . . . . . . . . . . . . . . .
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Template Sequence  L. . . . . . . EEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDLSHFN
Template Known Secondary structure  .......TTTTTB
TTS
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STT

S


BTTSS
SSSSSSS
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   97 ..100.........110.........120.........130.........140.........150.........160.........
 
   194.....200.........210.........220 .........230.........240......... 250.........260
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Query Sequence  . . . . . . . RQAPTADVAKIEAPLLLHFAELDTRIN. EGWPAYEAALKANNKVYEAYIYPGVNHGF. . . . . HNDSTPRYDKS
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Template Sequence  FEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRTTAPSDAYCLP
Template Known Secondary structure 


S

GGGBTTTT

TTS

TT
SSS
TTTT

S


TT
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SSSTT

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   170.........180.........190.........200.........210.........220.........230.........240.........
 
   261........270.......
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Query Sequence  AADLAWQRTLKWFDKYL
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Template Sequence  SVHRWVSWASDWLERQI
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   250.........260......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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