Job Description Q7DFU6 Confidence 99.90% Date Thu Jan 5 12:37:40 GMT 2012 Rank 78 Aligned Residues 228 % Identity 15% Template c3d0kA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc; PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis Resolution 1.83 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		N	Y	A	L	A	T	Q	V	E	F	T	D	P	E	I	V	A	E	Y	I	T	Y	P	S	P	N	G	H	G	E	V	R	G	Y	L	V	K	P	A	K	M	S	G	K	T	P	A	V	V	V	V	H	E	N	R	G	L	N	.	P	Y	I	E	D	V	A	R	R	V	A	K	A	G	Y	I	A	L	A	P	D
Query Conservation																																																												.
Alig confidence																														.																														.
Template Conservation																														.
Template Sequence		D	L	T	N	A	D	R	I	A	L	E	L	G	H	A	G	R	N	A	I	P	Y	L	D	N	A	D	R	.	P	F	T	L	N	T	Y	R	P	Y	G	Y	T	P	D	R	P	V	V	V	V	Q	H	G	V	L	R	N	G	A	D	Y	R	D	F	W	I	P	A	A	D	R	H	K	L	L	I	V	A	P	T
Template Known Secondary structure													S	S	S	S											T	T		.										T	T			T	T	S									T	T										T								T
Template Predicted Secondary structure																														.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																	.	.	.	.																															.
Query SS confidence																	.	.	.	.																															.
Query Sequence		G	L	S	S	V	G	G	Y	P	G	N	D	D	K	G	.	.	.	.	R	E	L	Q	Q	Q	V	D	P	T	N	L	M	N	D	F	F	A	A	I	E	F	M	Q	R	Y	P	Q	A	T	.	G	K	V	G	I	T	G	F	C	Y	G	G	G	V	S	N	A	A	A	V	A	Y	P	E	L	A	C	A	V	P
Query Conservation																	.	.	.	.																															.
Alig confidence																	.	.	.	.																															.
Template Conservation
Template Sequence		F	S	D	E	I	W	P	G	V	E	S	Y	N	N	G	R	A	F	T	A	A	G	N	P	R	H	V	D	G	W	T	Y	A	L	V	A	R	V	L	A	N	I	R	A	A	E	I	A	D	C	E	Q	V	Y	L	F	G	H	S	A	G	G	Q	F	V	H	R	L	X	S	S	Q	P	H	A	P	F	H	A	V
Template Known Secondary structure				T	T	T	S						T	T	T	T	T		B		T	T	S		B			G	G	G	S	T	T													T	T	S				S	S							T													S		S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		191	.	.																																									.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query Sequence		F	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	A	P	T	A	D	V	A	K	I	E	A	P	L	L	L	H	F	A	E	L	D	T	R	I	N	.	.	.	E	G	W	P	A	Y	E
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		T	A	A	N	P	G	W	Y	T	L	P	T	F	E	H	R	F	P	E	G	L	D	G	V	G	L	T	E	D	H	L	A	R	L	L	A	Y	P	X	T	I	L	A	G	D	Q	D	I	A	T	P	N	L	P	S	E	P	A	A	L	R	Q	G	P	H	R	Y	A	R	A	R	H	Y	Y	E	A	G	Q	R	A
Template Known Secondary structure					S		S	S				S	S	T	T	S	B	T	T	T	S	S	B	T	T	T												S								T	T							S			S					T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	K	A	N	N	K	V	Y	E	A	Y	I	Y	P	G	V	N	H	G	F	H	N	D	S	T	P	R	Y	D	K	S	A	A	D	L	A	W	Q	R	T	L	K	W	F	D	K	Y	L
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	Q	R	G	L	P	F	G	W	Q	L	Q	V	V	P	G	I	G	H	D	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	A	X	S	Q	V	C	A	S	L	W	F	D	G	R	X
Template Known Secondary structure						T											T	T			S				.	.	.	.	.	.	.	.	.	.	.	.												T	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.													.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions