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Job DescriptionQ7DFU6
Confidence100.00%DateThu Jan 5 12:37:40 GMT 2012
Rank6Aligned Residues220
% Identity16%Templatec1z68A_
PDB info PDB header:lyaseChain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70..... ....80.........90..... ....100.........110........
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Query Sequence  FTDPEIVAEYITYPSPNGHGEVRGYLVKPA. . KMSGKTPAVVVVHENRGLNP. . . . . YIEDVARRVAKAGYIALAPDGLS
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Template Sequence  LKNIQLPKEEIKKLEVDEI. TLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRG
Template Known Secondary structure  TTSB


TT.
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SSS



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TT
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   498.500.........510...... ...520.........530.........540.........550.........560.........570......
 
   119120.........130.........140.........150.........160 .........170.........180... ......190...
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Query Sequence  SVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQAT. GKVGITGFCYGGGVSNAAAVAYP. ELACAVPFYG. . .
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Template Sequence  TAFQGDKLLYAV. . . . YRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSS
Template Known Secondary structure  BSSS
GGG....TT
TTTTS
TTTSSS

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   577..580........ .590.........600.........610.........620.........630.........640.........650..
 
   194.....200..... ....210.........220 .........230.........240.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . RQAPTADVAKIE. APLLLHFAELDTRIN. EGWPAYEAALKANNKVYEAYIYPGV
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Template Sequence  WEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQ
Template Known Secondary structure  TTTSB

SSTTTTT
SGGGGGGGTTSTT
SSS
TTT


TT
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   653......660.........670.........680.........690.........700.........710.........720.........730..
 
   246...250.........260.........270........
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Query Sequence  NHGFHNDSTPRYDKSAADLAWQRTLKWFDKYLS
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Template Sequence  NHGLS. . . . . . . . GLSTNHLYTHMTHFLKQCFS
Template Known Secondary structure 
TT

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   733.... ..740.........750.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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