Phyre 2 alignment of P77360 with c3pi7A

Job Description P77360
Confidence 100.00% Date Wed Jan 25 15:21:11 GMT 2012

Rank 39 Aligned Residues 313

% Identity 22% Template c3pi7A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidoreductase; PDBTitle: crystal structure of a putative nadph:quinone reductase (mll3093) from2 mesorhizobium loti at 1.71 a resolution

Resolution 1.71 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.																.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	T	M	L	A	A	Y	L	P	G	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	D	L	R	E	V	A	V	P	T	P	G	I	N	Q	V	L	I	K	M	K	S	S	G	I	C	G	S	D	V	H	Y	I	Y	H	Q	H	R	A	T	A	A	A	P	D	K	P	L	Y	Q	G	F
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence	S	E	X	K	A	L	L	L	V	G	D	G	Y	T	K	T	P	S	G	S	A	L	E	A	X	E	P	Y	L	E	Q	G	R	I	A	V	P	A	P	G	P	S	Q	V	L	I	K	V	N	L	A	S	I	N	P	S	D	V	A	F	I	K	G	Q	Y	G	Q	P	R	.	.	.	.	.	.	.	V	K	G	R
Template Known Secondary structure	S									S		B	S		S	S				S					S	T	T	T													T	T																				T	T		S	S	S		B	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80

	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	N	G	H	E	P	C	G	Q	I	V	A	M	G	Q	G	C	R	H	F	K	E	G	D	R	V	L	V	Y	H	I	S	G	C	G	F	C	P	N	C	R	R	G	F	P	I	S	C	T	G	E	G	K	A	A	Y	G	W	Q	R	D	G	G	H	A	E	Y	L	L	A	E	E	K	D	L	I	L	L	P	D
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	A	G	F	E	G	V	G	T	I	V	A	G	G	D	E	P	Y	A	K	S	L	V	G	K	R	V	A	F	A	T	G	L	S	N	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	W	A	E	Y	A	V	A	E	A	A	A	C	I	P	L	L	D
Template Known Secondary structure	B			S											S	S							T	T								T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	B	S						G	G	G						T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	S	Y	E	D	G	A	F	I	S	C	G	V	G	T	A	Y	E	G	I	L	R	G	E	V	S	G	S	D	N	V	L	V	V	G	L	G	P	V	G	M	M	A	M	M	L	A	K	G	R	G	A	K	R	I	I	G	V	D	M	L	P	E	R	L	A	M	A	K	Q	L	G	V	M	D	H	G	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	V	R	D	E	D	G	A	A	X	I	V	N	P	L	T	A	I	A	X	F	D	I	V	K	Q	E	G	E	K	A	F	V	X	T	A	G	A	S	Q	L	C	K	L	I	I	G	L	A	K	E	E	G	F	R	P	I	V	T	V	R	R	D	E	Q	I	A	L	L	K	D	I	G	A	A	H	V	L	N	E
Template Known Secondary structure	T	S						T	T	S	S																			S					S	S	T	T	S														T								S		G	G	G								T		S					T
Template Predicted Secondary structure
Template SS confidence
	136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																						.	.																							.	.	.
Query SS confidence																																																						.	.																							.	.	.
Query Sequence	A	T	T	E	G	L	P	Q	I	I	A	E	L	T	H	G	G	A	D	V	A	L	D	C	S	G	N	A	A	G	R	L	L	A	L	Q	S	T	A	D	W	G	R	V	V	Y	I	G	E	T	G	K	V	.	.	E	F	E	V	S	A	D	L	M	H	H	Q	R	R	I	I	G	S	W	V	T	S	.	.	.
Query Conservation																																																						.	.																							.	.	.
Alig confidence																											.																											.	.																							.	.	.
Template Conservation																											.
Template Sequence	K	A	P	D	F	E	A	T	L	R	E	V	X	K	A	E	Q	P	R	I	F	L	D	A	V	T	.	G	P	L	A	S	A	I	F	N	A	X	P	K	R	A	R	W	I	I	Y	G	R	L	D	P	D	A	T	V	I	R	E	P	G	Q	L	I	F	Q	H	K	H	I	E	G	F	W	L	S	E	W	X	R
Template Known Secondary structure	T	S	T	T																				S	S		.											S		T	T									S			S					S		T						S
Template Predicted Secondary structure																											.
Template SS confidence
	216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

							302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	L	F	H	M	E	K	C	A	H	D	L	T	D	W	K	L	W	P	R	N	A	I	T	H	R	F	S	L	E	Q	A	G	D	A	Y	A	L	M	A	S	G	K	C	G	K	V	V	I	N
Query Conservation	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.																			.	.	.
Template Conservation																									.	.	.
Template Sequence	Q	F	K	E	R	R	G	P	A	I	L	E	A	Q	K	R	F	S	D	G	R	W	S	T	.	.	.	V	T	A	V	V	P	L	A	E	A	I	A	W	V	P	A	E	L	T	K	P	N	G	K	V	F	I	R
Template Known Secondary structure		T																	T	S	S				.	.	.																			T	S	S	S	S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
	295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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