Job Description P77360 Confidence 100.00% Date Wed Jan 25 15:21:11 GMT 2012 Rank 43 Aligned Residues 316 % Identity 20% Template c2j3iB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent oxidoreductase p1; PDBTitle: crystal structure of arabidopsis thaliana double bond2 reductase (at5g16970)-binary complex Resolution 2.8 Å

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		1	.		.	.	.	.	.	.	.	10	.								.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.										.	.	.	.	.	.	.															.	.	.
Query SS confidence				.										.	.	.	.	.	.	.															.	.	.
Query Sequence		M	K	.	T	M	L	A	A	Y	L	P	G	.	.	.	.	.	.	.	N	S	T	V	D	L	R	E	V	A	V	P	T	P	.	.	.	G	I	N	Q	V	L	I	K	M	K	S	S	G	I	C	G	S	D	V	H	Y	I	Y	H	Q	H	R	A	T	A	A	A	P	D	K	P	L	Y	Q	G	F	I	N	G
Query Conservation				.										.	.	.	.	.	.	.															.	.	.
Alig confidence				.										.	.	.	.	.	.	.															.	.	.																																	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		M	T	A	T	N	K	Q	V	I	L	K	D	Y	V	S	G	F	P	T	E	S	D	F	D	F	T	T	T	T	V	E	L	R	V	P	E	G	T	N	S	V	L	V	K	N	L	Y	L	S	C	D	P	Y	M	R	I	R	M	G	K	P	D	P	S	T	A	A	L	.	.	.	.	.	A	Q	A	Y	T	P	G
Template Known Secondary structure								B				S	S		B	S	S	S			G	G	G											S				S	S	S													G	G	G	G	T	T	T	B				T	T	T	T			.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.						.	1070	.	.	.	.	.
		70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		H	.	.	E	P	C	G	Q	I	V	A	M	G	Q	G	C	R	H	F	K	E	G	D	R	V	L	V	Y	H	I	S	G	C	G	F	C	P	N	C	R	R	G	F	P	I	S	C	T	G	E	G	K	A	A	Y	G	W	Q	R	D	G	G	H	A	E	Y	L	L	A	E	E	K	D	L	I	L	L	P	D	A
Query Conservation			.	.
Alig confidence			.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	P	I	Q	G	Y	G	V	S	R	I	I	E	S	G	H	P	D	Y	K	K	G	D	L	L	W	G	I	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	E	E	Y	S	V	I	T	P	M	T	H	A	H	F	K	I	Q	H	T	D
Template Known Secondary structure		S	B														S	T	T			T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B	S	S							T	T	T								S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1076	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.																														.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.
		148	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure										.																					.	.
Query SS confidence										.																					.	.
Query Sequence		L	S	Y	E	D	G	A	F	.	I	S	C	G	V	G	T	A	Y	E	G	I	L	R	G	E	V	S	G	S	.	.	D	N	V	L	V	V	G	L	G	P	V	G	M	M	A	M	M	L	A	K	G	R	G	A	K	R	I	I	G	V	D	M	L	P	E	R	L	A	M	A	K	Q	L	G	V	M	D	H	G
Query Conservation										.																					.	.
Alig confidence										.																					.	.
Template Conservation
Template Sequence		V	P	L	S	Y	Y	T	G	L	L	G	M	P	G	M	T	A	Y	A	G	F	Y	E	V	C	S	P	K	E	G	E	T	V	Y	V	S	A	A	S	G	A	V	G	Q	L	V	G	Q	L	A	K	M	M	G	C	Y	V	V	G	S	A	G	S	K	E	K	V	D	L	L	K	T	K	F	G	F	D	D	A	F
Template Known Secondary structure		S		G	G	G	G	G	T	T	T	S												T	T	S				T	T						S	S		S	S	T	T										T	T	T								S	S	T	T							T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		1127	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		Y	L	A	T	T	E	G	L	P	Q	I	I	A	E	L	T	H	G	G	A	D	V	A	L	D	C	S	G	N	A	A	G	R	L	L	A	L	Q	S	T	A	D	W	G	R	V	V	Y	I	G	.	.	.	.	.	.	E	T	G	K	V	E	F	E	V	S	A	D	L	M	H	H	Q	R	R	I	I	G	S	W
Query Conservation																																																				.	.	.	.	.	.
Alig confidence																															.																					.	.	.	.	.	.
Template Conservation																															.
Template Sequence		N	Y	K	E	E	S	D	L	T	A	A	L	K	R	C	F	P	N	G	I	D	I	Y	F	E	N	V	G	G	.	K	M	L	D	A	V	L	V	N	M	N	M	H	G	R	I	A	V	C	G	M	I	S	Q	Y	N	L	E	N	Q	E	G	V	H	N	L	S	N	I	I	Y	K	R	N	R	I	Q	G	F	V
Template Known Secondary structure			T	T	T		S	S										T	T		B	S					S	S		T	.										B		T	T									T	T	G	G	G		S	S							G	G	G	G	G	T	S
Template Predicted Secondary structure																															.
Template SS confidence
		1207	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.
		299	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.
Predicted Secondary structure				.	.	.	.	.																																													.
Query SS confidence				.	.	.	.	.																																													.
Query Sequence		V	T	.	.	.	.	.	S	L	F	H	M	E	K	C	A	H	D	L	T	D	W	K	L	W	P	R	N	A	I	T	H	R	F	S	L	E	Q	A	G	D	A	Y	A	L	M	A	S	G	K	C	.	G	K	V	V	I	N	F	P	D
Query Conservation				.	.	.	.	.																																													.
Alig confidence				.	.	.	.	.																				.	.																								.
Template Conservation																												.	.
Template Sequence		V	S	D	F	Y	D	K	Y	S	K	F	L	E	F	V	L	P	H	I	R	E	G	K	I	T	Y	.	.	V	E	D	V	A	D	G	L	E	K	A	P	E	A	L	V	G	L	F	H	G	K	N	V	G	K	Q	V	V	V	V	A	R
Template Known Secondary structure		G	G	G	G	T	T	T	T												T	T	T	S				.	.						B	S	G	G	G								T	T	T	T			S	S						S	S
Template Predicted Secondary structure																												.	.
Template SS confidence
		1286	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.			.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions